Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.4■□□□□ 0.7
CSPG4Q6UVK1 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CSPG4Q6UVK1 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CSPG4Q6UVK1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.4■□□□□ 0.7
CSPG4Q6UVK1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CSPG4Q6UVK1 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
CSPG4Q6UVK1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 RARRES2P11-201ENST00000635158 484 ntBASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.39■□□□□ 0.69
CSPG4Q6UVK1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CSPG4Q6UVK1 RASA4CP-201ENST00000424092 1398 ntBASIC19.38■□□□□ 0.69
CSPG4Q6UVK1 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CSPG4Q6UVK1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CSPG4Q6UVK1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CSPG4Q6UVK1 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 AC091305.1-201ENST00000479476 895 ntBASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.37■□□□□ 0.69
CSPG4Q6UVK1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 SYT6-210ENST00000641643 1587 ntBASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.36■□□□□ 0.69
CSPG4Q6UVK1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 AC142472.1-201ENST00000612013 1741 ntBASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 AP004609.3-201ENST00000610705 1884 ntBASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.35■□□□□ 0.69
CSPG4Q6UVK1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 ESRRAP2-201ENST00000418437 1549 ntBASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 AC034268.1-201ENST00000441047 882 ntBASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.34■□□□□ 0.69
CSPG4Q6UVK1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CSPG4Q6UVK1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
CSPG4Q6UVK1 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.33■□□□□ 0.69
CSPG4Q6UVK1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
CSPG4Q6UVK1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSPG4Q6UVK1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.33■□□□□ 0.68
CSPG4Q6UVK1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CSPG4Q6UVK1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CSPG4Q6UVK1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CSPG4Q6UVK1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CSPG4Q6UVK1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.33■□□□□ 0.68
CSPG4Q6UVK1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSPG4Q6UVK1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CSPG4Q6UVK1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.32■□□□□ 0.68
CSPG4Q6UVK1 SRD5A1P1-201ENST00000442297 786 ntBASIC19.32■□□□□ 0.68
CSPG4Q6UVK1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSPG4Q6UVK1 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CSPG4Q6UVK1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CSPG4Q6UVK1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 MIR6722-201ENST00000617286 78 ntBASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CSPG4Q6UVK1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CSPG4Q6UVK1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.3■□□□□ 0.68
CSPG4Q6UVK1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSPG4Q6UVK1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CSPG4Q6UVK1 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CSPG4Q6UVK1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms