Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
SOX9P48436 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.98■■□□□ 1.43
SOX9P48436 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.98■■□□□ 1.43
SOX9P48436 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SOX9P48436 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SOX9P48436 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SOX9P48436 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.97■■□□□ 1.43
SOX9P48436 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SOX9P48436 ZNRF2P3-201ENST00000424200 374 ntBASIC23.97■■□□□ 1.43
SOX9P48436 AC106739.1-201ENST00000617035 715 ntBASIC23.97■■□□□ 1.43
SOX9P48436 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.97■■□□□ 1.43
SOX9P48436 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.97■■□□□ 1.43
SOX9P48436 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.96■■□□□ 1.43
SOX9P48436 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.96■■□□□ 1.43
SOX9P48436 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SOX9P48436 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.96■■□□□ 1.43
SOX9P48436 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.96■■□□□ 1.43
SOX9P48436 MIR6722-201ENST00000617286 78 ntBASIC23.96■■□□□ 1.43
SOX9P48436 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.96■■□□□ 1.43
SOX9P48436 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.96■■□□□ 1.43
SOX9P48436 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.96■■□□□ 1.43
SOX9P48436 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SOX9P48436 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.95■■□□□ 1.43
SOX9P48436 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.95■■□□□ 1.42
SOX9P48436 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.95■■□□□ 1.42
SOX9P48436 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SOX9P48436 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
SOX9P48436 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
SOX9P48436 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SOX9P48436 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SOX9P48436 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.95■■□□□ 1.42
SOX9P48436 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SOX9P48436 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
SOX9P48436 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.94■■□□□ 1.42
SOX9P48436 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SOX9P48436 UNC93B3-201ENST00000308076 687 ntBASIC23.94■■□□□ 1.42
SOX9P48436 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SOX9P48436 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
SOX9P48436 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.94■■□□□ 1.42
SOX9P48436 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.94■■□□□ 1.42
SOX9P48436 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SOX9P48436 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.94■■□□□ 1.42
SOX9P48436 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
SOX9P48436 AC097639.1-201ENST00000565519 1891 ntBASIC23.94■■□□□ 1.42
SOX9P48436 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
SOX9P48436 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SOX9P48436 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SOX9P48436 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
SOX9P48436 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.92■■□□□ 1.42
SOX9P48436 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
SOX9P48436 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
SOX9P48436 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.92■■□□□ 1.42
SOX9P48436 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SOX9P48436 AC142381.2-201ENST00000566120 298 ntBASIC23.92■■□□□ 1.42
SOX9P48436 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SOX9P48436 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
SOX9P48436 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SOX9P48436 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SOX9P48436 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.91■■□□□ 1.42
SOX9P48436 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.91■■□□□ 1.42
SOX9P48436 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
SOX9P48436 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SOX9P48436 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SOX9P48436 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SOX9P48436 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SOX9P48436 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SOX9P48436 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.9■■□□□ 1.42
SOX9P48436 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SOX9P48436 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SOX9P48436 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
SOX9P48436 AL136162.1-201ENST00000607711 1078 ntBASIC23.9■■□□□ 1.42
SOX9P48436 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
SOX9P48436 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SOX9P48436 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
SOX9P48436 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
SOX9P48436 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.89■■□□□ 1.41
SOX9P48436 AL031432.3-201ENST00000607698 485 ntBASIC23.89■■□□□ 1.41
SOX9P48436 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SOX9P48436 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SOX9P48436 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SOX9P48436 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SOX9P48436 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SOX9P48436 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.88■■□□□ 1.41
SOX9P48436 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
SOX9P48436 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.88■■□□□ 1.41
SOX9P48436 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
SOX9P48436 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SOX9P48436 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.88■■□□□ 1.41
SOX9P48436 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
SOX9P48436 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SOX9P48436 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SOX9P48436 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SOX9P48436 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SOX9P48436 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SOX9P48436 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
SOX9P48436 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SOX9P48436 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.86■■□□□ 1.41
SOX9P48436 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.86■■□□□ 1.41
SOX9P48436 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SOX9P48436 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms