Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 MIR4508-201ENST00000584178 70 ntBASIC26.01■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.01■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC25.99■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 AC090877.2-201ENST00000558441 1738 ntBASIC25.99■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 AP003733.4-201ENST00000623785 1697 ntBASIC25.99■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 AL139125.2-201ENST00000623134 1869 ntBASIC25.98■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 RARRES2P1-201ENST00000474487 481 ntBASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 AC120024.1-201ENST00000562672 995 ntBASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 AC103724.3-201ENST00000564481 992 ntBASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.97■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 AC022616.5-201ENST00000518796 181 ntBASIC25.96■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 TMEM202-AS1-202ENST00000565181 2325 ntBASIC25.96■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.96■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.96■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.95■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 YBX1P4-201ENST00000392794 808 ntBASIC25.94■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.94■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.94■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 HLA-L-211ENST00000482052 1765 ntBASIC25.93■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.93■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.9■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.9■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 KRT18P24-201ENST00000344739 1156 ntBASIC25.89■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.89■■□□□ 1.74
NPHP3-ACAD11A0A0J9YXS1 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.89■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 THA1P-201ENST00000590384 1145 ntBASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 LINC01124-201ENST00000409786 2117 ntBASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.88■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.87■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 AC011551.1-201ENST00000614101 683 ntBASIC25.87■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3-ACAD11A0A0J9YXS1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms