Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.39■□□□□ 0.54
TRAV41A0A0B4J266 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV41A0A0B4J266 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV41A0A0B4J266 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAV41A0A0B4J266 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRAV41A0A0B4J266 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV41A0A0B4J266 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV41A0A0B4J266 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV41A0A0B4J266 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV41A0A0B4J266 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV41A0A0B4J266 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.37■□□□□ 0.53
TRAV41A0A0B4J266 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV41A0A0B4J266 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAV41A0A0B4J266 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV41A0A0B4J266 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV41A0A0B4J266 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV41A0A0B4J266 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.36■□□□□ 0.53
TRAV41A0A0B4J266 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 AP003733.4-201ENST00000623785 1697 ntBASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
TRAV41A0A0B4J266 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 MIR4281-201ENST00000580852 62 ntBASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV41A0A0B4J266 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV41A0A0B4J266 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.33■□□□□ 0.53
TRAV41A0A0B4J266 AC138932.3-201ENST00000567634 1902 ntBASIC18.33■□□□□ 0.53
TRAV41A0A0B4J266 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV41A0A0B4J266 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.33■□□□□ 0.52
TRAV41A0A0B4J266 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV41A0A0B4J266 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
TRAV41A0A0B4J266 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.33■□□□□ 0.52
TRAV41A0A0B4J266 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV41A0A0B4J266 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV41A0A0B4J266 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV41A0A0B4J266 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV41A0A0B4J266 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV41A0A0B4J266 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV41A0A0B4J266 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV41A0A0B4J266 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.32■□□□□ 0.52
TRAV41A0A0B4J266 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV41A0A0B4J266 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 AL451085.2-201ENST00000605085 799 ntBASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV41A0A0B4J266 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRAV41A0A0B4J266 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV41A0A0B4J266 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 BX664725.1-201ENST00000438252 379 ntBASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms