Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 KRT43P-201ENST00000434019 910 ntBASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 AC245100.5-201ENST00000452108 331 ntBASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.77■□□□□ 0.12
TM9SF3Q9HD45 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TM9SF3Q9HD45 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 PAUPAR-201ENST00000630360 2965 ntBASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AC092658.1-201ENST00000505836 891 ntBASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 USP32P1-208ENST00000506594 1164 ntBASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AC104989.1-201ENST00000519711 778 ntBASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AL033527.4-201ENST00000641026 673 ntBASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 KRT8P22-201ENST00000562317 1415 ntBASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TM9SF3Q9HD45 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms