Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A5P29400 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.47■□□□□ 0.55
COL4A5P29400 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A5P29400 DUX4L47-201ENST00000566374 394 ntBASIC18.47■□□□□ 0.55
COL4A5P29400 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A5P29400 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A5P29400 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A5P29400 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL4A5P29400 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 AC009093.2-202ENST00000620513 2079 ntBASIC18.46■□□□□ 0.55
COL4A5P29400 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A5P29400 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 AC073150.1-201ENST00000450406 1084 ntBASIC18.46■□□□□ 0.55
COL4A5P29400 AC021723.1-201ENST00000486306 515 ntBASIC18.46■□□□□ 0.55
COL4A5P29400 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A5P29400 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
COL4A5P29400 AC011491.1-203ENST00000637688 543 ntBASIC18.46■□□□□ 0.55
COL4A5P29400 AC004923.1-202ENST00000642106 209 ntBASIC18.46■□□□□ 0.55
COL4A5P29400 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL4A5P29400 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
COL4A5P29400 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.46■□□□□ 0.55
COL4A5P29400 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A5P29400 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A5P29400 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
COL4A5P29400 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.46■□□□□ 0.54
COL4A5P29400 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.46■□□□□ 0.54
COL4A5P29400 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A5P29400 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.45■□□□□ 0.54
COL4A5P29400 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.45■□□□□ 0.54
COL4A5P29400 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC18.45■□□□□ 0.54
COL4A5P29400 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
COL4A5P29400 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A5P29400 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.45■□□□□ 0.54
COL4A5P29400 AC090164.2-201ENST00000611487 516 ntBASIC18.45■□□□□ 0.54
COL4A5P29400 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A5P29400 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.45■□□□□ 0.54
COL4A5P29400 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A5P29400 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL4A5P29400 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
COL4A5P29400 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL4A5P29400 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
COL4A5P29400 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL4A5P29400 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A5P29400 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.44■□□□□ 0.54
COL4A5P29400 AC114501.1-201ENST00000445949 172 ntBASIC18.44■□□□□ 0.54
COL4A5P29400 MESTP3-201ENST00000503460 968 ntBASIC18.44■□□□□ 0.54
COL4A5P29400 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.44■□□□□ 0.54
COL4A5P29400 AC242376.1-201ENST00000559033 726 ntBASIC18.44■□□□□ 0.54
COL4A5P29400 MIR4754-201ENST00000582477 89 ntBASIC18.44■□□□□ 0.54
COL4A5P29400 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL4A5P29400 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A5P29400 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A5P29400 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms