Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.16■□□□□ 0.02
SEMA3DO95025 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
SEMA3DO95025 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.16■□□□□ 0.02
SEMA3DO95025 HLA-J-203ENST00000494367 1087 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.16■□□□□ 0.02
SEMA3DO95025 AC069262.1-201ENST00000539058 672 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.16■□□□□ 0.02
SEMA3DO95025 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 MIR4453-201ENST00000584019 89 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 AC097359.3-201ENST00000603982 1210 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 AC023511.2-201ENST00000618803 211 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 LINC00628-201ENST00000628516 1289 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 TMBIM7P-203ENST00000641617 1718 ntBASIC15.16■□□□□ 0.02
SEMA3DO95025 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SEMA3DO95025 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SEMA3DO95025 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SEMA3DO95025 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.15■□□□□ 0.02
SEMA3DO95025 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
SEMA3DO95025 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SEMA3DO95025 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.15■□□□□ 0.02
SEMA3DO95025 AZGP1P1-201ENST00000411909 902 ntBASIC15.15■□□□□ 0.02
SEMA3DO95025 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.15■□□□□ 0.02
SEMA3DO95025 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.15■□□□□ 0.02
SEMA3DO95025 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.15■□□□□ 0.02
SEMA3DO95025 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.15■□□□□ 0.02
SEMA3DO95025 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.15■□□□□ 0.02
SEMA3DO95025 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SEMA3DO95025 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SEMA3DO95025 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
SEMA3DO95025 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.15■□□□□ 0.02
SEMA3DO95025 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.15■□□□□ 0.02
SEMA3DO95025 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.15■□□□□ 0.02
SEMA3DO95025 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SEMA3DO95025 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.14■□□□□ 0.01
SEMA3DO95025 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SEMA3DO95025 CICP13-201ENST00000422015 2789 ntBASIC15.14■□□□□ 0.01
SEMA3DO95025 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.14■□□□□ 0.01
SEMA3DO95025 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
SEMA3DO95025 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.14■□□□□ 0.01
SEMA3DO95025 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms