Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LINC01815-202ENST00000641468 1409 ntBASIC11.96□□□□□ -0.5
COL6A5A8TX70 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
COL6A5A8TX70 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 RN7SL258P-201ENST00000478664 300 ntBASIC11.95□□□□□ -0.5
COL6A5A8TX70 MIR4783-201ENST00000580343 82 ntBASIC11.95□□□□□ -0.5
COL6A5A8TX70 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 PP12613-201ENST00000424958 2230 ntBASIC11.95□□□□□ -0.5
COL6A5A8TX70 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 NHP2-202ENST00000314397 599 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
COL6A5A8TX70 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 AL138688.1-201ENST00000624851 1594 ntBASIC11.95□□□□□ -0.5
COL6A5A8TX70 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
COL6A5A8TX70 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 PAM16-211ENST00000575848 518 ntTSL 3 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 MIR4472-1-201ENST00000584349 80 ntBASIC11.94□□□□□ -0.5
COL6A5A8TX70 AL358472.3-201ENST00000608147 415 ntBASIC11.94□□□□□ -0.5
COL6A5A8TX70 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AL645728.2-202ENST00000641679 227 ntBASIC11.94□□□□□ -0.5
COL6A5A8TX70 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
COL6A5A8TX70 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AK6-201ENST00000380818 1183 ntTSL 2 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 ACTBP8-201ENST00000403258 1108 ntBASIC11.94□□□□□ -0.5
COL6A5A8TX70 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC11.94□□□□□ -0.5
COL6A5A8TX70 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms