Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 AC232323.1-201ENST00000540724 2099 ntBASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 REXO1L5P-201ENST00000622260 2098 ntBASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 AL589702.1-201ENST00000641229 1509 ntBASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 TFAMP1-201ENST00000412727 736 ntBASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 PGAM5P1-201ENST00000518923 814 ntBASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC39Q9UFE4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AL355306.1-201ENST00000415580 579 ntBASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AC004832.2-201ENST00000426397 482 ntBASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AC092902.6-201ENST00000641783 218 ntBASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 AP003680.1-201ENST00000598970 3660 ntBASIC18.34■□□□□ 0.53
CCDC39Q9UFE4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC39Q9UFE4 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms