Protein–RNA interactions for Protein: Q9NUP9

LIN7C, Protein lin-7 homolog C, humanhuman

Known RBP Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7CQ9NUP9 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
LIN7CQ9NUP9 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 MIR1233-2-201ENST00000408138 82 ntBASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 MIR1233-1-201ENST00000408722 82 ntBASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 CEND1P1-201ENST00000451006 455 ntBASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 AC112482.1-201ENST00000492080 688 ntBASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 FAM45BP-202ENST00000592932 1624 ntBASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIN7CQ9NUP9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AC073439.1-201ENST00000624121 1774 ntBASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AC105250.1-201ENST00000509378 2057 ntBASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AL671277.1-201ENST00000429656 993 ntBASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.18□□□□□ -0.3
LIN7CQ9NUP9 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms