Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 MIR661-201ENST00000384842 89 ntBASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AC004461.2-201ENST00000629517 803 ntBASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM39Q9HCM9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 AC018892.3-201ENST00000623986 2499 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 AC136604.1-201ENST00000418535 575 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 TARDBPP1-201ENST00000442013 1203 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 SERBP1P5-201ENST00000510079 1181 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms