Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC13.5□□□□□ -0.25
COL12A1Q99715 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC13.5□□□□□ -0.25
COL12A1Q99715 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.5□□□□□ -0.25
COL12A1Q99715 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.5□□□□□ -0.25
COL12A1Q99715 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13.49□□□□□ -0.25
COL12A1Q99715 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.49□□□□□ -0.25
COL12A1Q99715 SOD2-202ENST00000367054 815 ntTSL 2 BASIC13.49□□□□□ -0.25
COL12A1Q99715 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 RNMTL1P1-201ENST00000454103 560 ntBASIC13.49□□□□□ -0.25
COL12A1Q99715 PFN2-206ENST00000461930 606 ntTSL 4 BASIC13.49□□□□□ -0.25
COL12A1Q99715 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 AC015909.3-201ENST00000572855 1794 ntBASIC13.49□□□□□ -0.25
COL12A1Q99715 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL12A1Q99715 HCG27-204ENST00000424675 895 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.49□□□□□ -0.25
COL12A1Q99715 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.49□□□□□ -0.25
COL12A1Q99715 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL12A1Q99715 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.49□□□□□ -0.25
COL12A1Q99715 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
COL12A1Q99715 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.49□□□□□ -0.25
COL12A1Q99715 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL12A1Q99715 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 BUD31-205ENST00000456893 512 ntTSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AC141586.5-201ENST00000624546 2050 ntBASIC13.48□□□□□ -0.25
COL12A1Q99715 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC13.48□□□□□ -0.25
COL12A1Q99715 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 AC053503.3-201ENST00000448375 114 ntBASIC13.48□□□□□ -0.25
COL12A1Q99715 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC13.48□□□□□ -0.25
COL12A1Q99715 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.48□□□□□ -0.25
COL12A1Q99715 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 AP001582.1-201ENST00000525856 295 ntBASIC13.48□□□□□ -0.25
COL12A1Q99715 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
COL12A1Q99715 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC13.48□□□□□ -0.25
COL12A1Q99715 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL12A1Q99715 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL12A1Q99715 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms