Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CDH4P55283 AC127383.1-201ENST00000444697 1800 ntBASIC16.08■□□□□ 0.16
CDH4P55283 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH4P55283 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CDH4P55283 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CDH4P55283 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CDH4P55283 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH4P55283 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CDH4P55283 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.07■□□□□ 0.16
CDH4P55283 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH4P55283 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CDH4P55283 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.07■□□□□ 0.16
CDH4P55283 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.07■□□□□ 0.16
CDH4P55283 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.07■□□□□ 0.16
CDH4P55283 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.07■□□□□ 0.16
CDH4P55283 MIR8072-201ENST00000614241 80 ntBASIC16.07■□□□□ 0.16
CDH4P55283 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH4P55283 AC105233.6-201ENST00000642093 218 ntBASIC16.07■□□□□ 0.16
CDH4P55283 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH4P55283 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH4P55283 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.07■□□□□ 0.16
CDH4P55283 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH4P55283 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH4P55283 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH4P55283 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 CICP13-201ENST00000422015 2789 ntBASIC16.06■□□□□ 0.16
CDH4P55283 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 DGCR5-201ENST00000399539 862 ntBASIC16.06■□□□□ 0.16
CDH4P55283 AC098850.1-201ENST00000419919 790 ntBASIC16.06■□□□□ 0.16
CDH4P55283 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CDH4P55283 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 AP005018.1-201ENST00000525475 301 ntBASIC16.06■□□□□ 0.16
CDH4P55283 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.06■□□□□ 0.16
CDH4P55283 AC092127.1-201ENST00000567093 3455 ntBASIC16.06■□□□□ 0.16
CDH4P55283 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH4P55283 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH4P55283 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CDH4P55283 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CDH4P55283 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CDH4P55283 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CDH4P55283 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH4P55283 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH4P55283 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH4P55283 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH4P55283 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
CDH4P55283 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH4P55283 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH4P55283 AC098614.1-201ENST00000368528 745 ntBASIC16.05■□□□□ 0.16
CDH4P55283 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH4P55283 ELK1P1-201ENST00000485699 580 ntBASIC16.05■□□□□ 0.16
CDH4P55283 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.05■□□□□ 0.16
CDH4P55283 AC092552.1-201ENST00000547243 906 ntBASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms