Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 PRAL-201ENST00000624952 3286 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SMARCA1P28370 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SMARCA1P28370 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SMARCA1P28370 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 TMBIM7P-203ENST00000641617 1718 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.97■□□□□ 0.47
SMARCA1P28370 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.97■□□□□ 0.47
SMARCA1P28370 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 VDAC1P7-201ENST00000462417 847 ntBASIC17.97■□□□□ 0.47
SMARCA1P28370 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.97■□□□□ 0.47
SMARCA1P28370 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.97■□□□□ 0.47
SMARCA1P28370 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.97■□□□□ 0.47
SMARCA1P28370 AL359711.2-201ENST00000563105 872 ntBASIC17.97■□□□□ 0.47
SMARCA1P28370 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SMARCA1P28370 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 AC092850.2-201ENST00000623821 2697 ntBASIC17.97■□□□□ 0.47
SMARCA1P28370 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.97■□□□□ 0.47
SMARCA1P28370 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.97■□□□□ 0.47
SMARCA1P28370 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SMARCA1P28370 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SMARCA1P28370 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.96■□□□□ 0.47
SMARCA1P28370 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SMARCA1P28370 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SMARCA1P28370 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.96■□□□□ 0.47
SMARCA1P28370 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 KRT8P22-201ENST00000562317 1415 ntBASIC17.96■□□□□ 0.47
SMARCA1P28370 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SMARCA1P28370 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.96■□□□□ 0.47
SMARCA1P28370 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.96■□□□□ 0.46
SMARCA1P28370 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.96■□□□□ 0.46
SMARCA1P28370 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SMARCA1P28370 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms