Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.1■□□□□ 0.17
COL9A1P20849 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 BNIP3P1-202ENST00000550043 1585 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.1■□□□□ 0.17
COL9A1P20849 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL9A1P20849 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL9A1P20849 AC010422.1-201ENST00000414548 543 ntTSL 2 BASIC16.1■□□□□ 0.17
COL9A1P20849 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 FAM197Y7-201ENST00000432892 766 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 AC078991.1-201ENST00000437297 610 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 RPL13P2-201ENST00000440687 659 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 RPL18P13-201ENST00000478088 569 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.1■□□□□ 0.17
COL9A1P20849 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.1■□□□□ 0.17
COL9A1P20849 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.1■□□□□ 0.17
COL9A1P20849 AC243562.2-201ENST00000561247 970 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
COL9A1P20849 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
COL9A1P20849 AC009948.4-201ENST00000604692 675 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.1■□□□□ 0.17
COL9A1P20849 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.1■□□□□ 0.17
COL9A1P20849 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.1■□□□□ 0.17
COL9A1P20849 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 REXO1L8P-201ENST00000604378 1897 ntBASIC16.1■□□□□ 0.17
COL9A1P20849 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 AC092171.3-201ENST00000610122 2651 ntBASIC16.09■□□□□ 0.17
COL9A1P20849 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 AL355478.1-201ENST00000431686 821 ntTSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 TARDBPP1-201ENST00000442013 1203 ntBASIC16.09■□□□□ 0.17
COL9A1P20849 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.09■□□□□ 0.17
COL9A1P20849 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 AC007663.3-201ENST00000609632 465 ntBASIC16.09■□□□□ 0.17
COL9A1P20849 AF254983.2-201ENST00000612331 135 ntBASIC16.09■□□□□ 0.17
COL9A1P20849 AL391262.2-201ENST00000622466 494 ntBASIC16.09■□□□□ 0.17
COL9A1P20849 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.09■□□□□ 0.17
COL9A1P20849 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.09■□□□□ 0.17
COL9A1P20849 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
COL9A1P20849 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL9A1P20849 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.09■□□□□ 0.17
COL9A1P20849 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL9A1P20849 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL9A1P20849 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL9A1P20849 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL9A1P20849 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL9A1P20849 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL9A1P20849 UROS-201ENST00000368774 744 ntTSL 2 BASIC16.08■□□□□ 0.16
COL9A1P20849 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL9A1P20849 C1QBPP1-201ENST00000400117 770 ntBASIC16.08■□□□□ 0.16
COL9A1P20849 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL9A1P20849 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
COL9A1P20849 AC245100.5-201ENST00000452108 331 ntBASIC16.08■□□□□ 0.16
COL9A1P20849 SERPINA13P-202ENST00000478994 924 ntBASIC16.08■□□□□ 0.16
COL9A1P20849 IGLV3-15-201ENST00000518356 244 ntBASIC16.08■□□□□ 0.16
COL9A1P20849 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.08■□□□□ 0.16
COL9A1P20849 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC16.08■□□□□ 0.16
COL9A1P20849 AL118516.1-201ENST00000564152 670 ntBASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms