Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LDB3O75112 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.86□□□□□ -0.03
LDB3O75112 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LDB3O75112 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.86□□□□□ -0.03
LDB3O75112 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.86□□□□□ -0.03
LDB3O75112 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.86□□□□□ -0.03
LDB3O75112 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.86□□□□□ -0.03
LDB3O75112 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LDB3O75112 AC011467.4-201ENST00000594891 528 ntBASIC14.86□□□□□ -0.03
LDB3O75112 AC074044.1-201ENST00000609673 707 ntBASIC14.86□□□□□ -0.03
LDB3O75112 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.86□□□□□ -0.03
LDB3O75112 AC004461.2-201ENST00000629517 803 ntBASIC14.86□□□□□ -0.03
LDB3O75112 AC004840.1-201ENST00000636359 365 ntBASIC14.86□□□□□ -0.03
LDB3O75112 AF228730.6-201ENST00000641497 218 ntBASIC14.86□□□□□ -0.03
LDB3O75112 AC084121.3-201ENST00000641716 218 ntBASIC14.86□□□□□ -0.03
LDB3O75112 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 AC068587.6-202ENST00000641839 5619 ntBASIC14.86□□□□□ -0.03
LDB3O75112 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.86□□□□□ -0.03
LDB3O75112 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.86□□□□□ -0.03
LDB3O75112 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDB3O75112 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LDB3O75112 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.85□□□□□ -0.03
LDB3O75112 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LDB3O75112 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 AC009090.5-201ENST00000624886 2285 ntBASIC14.85□□□□□ -0.03
LDB3O75112 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.85□□□□□ -0.03
LDB3O75112 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 FAM8A3P-201ENST00000427218 844 ntBASIC14.85□□□□□ -0.03
LDB3O75112 HMGN1P19-201ENST00000436976 333 ntBASIC14.85□□□□□ -0.03
LDB3O75112 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LDB3O75112 ZNF890P-202ENST00000530367 1156 ntBASIC14.85□□□□□ -0.03
LDB3O75112 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 AC135586.1-201ENST00000539323 574 ntBASIC14.85□□□□□ -0.03
LDB3O75112 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.85□□□□□ -0.03
LDB3O75112 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.85□□□□□ -0.03
LDB3O75112 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.85□□□□□ -0.03
LDB3O75112 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.85□□□□□ -0.03
LDB3O75112 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
LDB3O75112 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LDB3O75112 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDB3O75112 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
LDB3O75112 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LDB3O75112 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.84□□□□□ -0.03
LDB3O75112 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LDB3O75112 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms