Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC044860.1-202ENST00000559481 777 ntBASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AC005498.2-205ENST00000593218 784 ntBASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMC4Q9NTJ3 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SMC4Q9NTJ3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 PPT1-215ENST00000641471 2368 ntBASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 CYMP-203ENST00000474680 1263 ntBASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 GSN-206ENST00000394353 2311 ntTSL 2 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC20.26■□□□□ 0.83
SMC4Q9NTJ3 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 AC092384.3-202ENST00000564646 2873 ntBASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 BID-213ENST00000615414 2236 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 KRT18P64-201ENST00000434946 1219 ntBASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 LINC01115-203ENST00000606068 577 ntBASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 FES-204ENST00000414248 2327 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMC4Q9NTJ3 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 AC087481.3-201ENST00000602886 1894 ntBASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms