Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC024909.3-201ENST00000611513 2257 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 AC002472.2-201ENST00000442739 958 ntBASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 LINC02560-201ENST00000596379 459 ntBASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 AC074044.1-201ENST00000609673 707 ntBASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM39Q9HCM9 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 AC236430.1-201ENST00000402231 743 ntBASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 AC008761.3-201ENST00000624803 892 ntBASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
TRIM39Q9HCM9 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.71■□□□□ 0.1
TRIM39Q9HCM9 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM39Q9HCM9 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM39Q9HCM9 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms