Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 LINC01238-205ENST00000567549 1107 ntBASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AC005332.3-201ENST00000589904 676 ntBASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AL136162.1-201ENST00000607711 1078 ntBASIC9.81□□□□□ -0.84
LINC00643Q86TS7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AP001267.2-201ENST00000532619 2086 ntBASIC9.8□□□□□ -0.84
LINC00643Q86TS7 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AC004951.3-201ENST00000418645 1148 ntBASIC9.8□□□□□ -0.84
LINC00643Q86TS7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 OR10C1-204ENST00000622521 1039 ntBASIC9.8□□□□□ -0.84
LINC00643Q86TS7 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AL592424.1-201ENST00000563624 1536 ntBASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
LINC00643Q86TS7 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms