Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
LIMK1P53667 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK1P53667 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
LIMK1P53667 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK1P53667 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK1P53667 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 C2orf27AP3-201ENST00000434123 579 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 BX284668.4-201ENST00000453917 508 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK1P53667 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK1P53667 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK1P53667 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK1P53667 ACTG1P17-201ENST00000558391 1119 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 AC104640.1-201ENST00000562617 2109 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.57■□□□□ 0.08
LIMK1P53667 CLUHP6-201ENST00000580789 941 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK1P53667 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
LIMK1P53667 AC244669.2-201ENST00000612320 853 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 AL354718.3-201ENST00000616414 581 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.57■□□□□ 0.08
LIMK1P53667 CR382287.1-201ENST00000623954 586 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 AL139011.1-202ENST00000642063 584 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LIMK1P53667 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.57■□□□□ 0.08
LIMK1P53667 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LIMK1P53667 AL662844.4-201ENST00000606367 2838 ntBASIC15.57■□□□□ 0.08
LIMK1P53667 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK1P53667 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK1P53667 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
LIMK1P53667 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 BTBD6P1-201ENST00000412176 1267 ntBASIC15.56■□□□□ 0.08
LIMK1P53667 CNN2P8-201ENST00000421872 913 ntBASIC15.56■□□□□ 0.08
LIMK1P53667 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.56■□□□□ 0.08
LIMK1P53667 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC15.56■□□□□ 0.08
LIMK1P53667 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LIMK1P53667 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.56■□□□□ 0.08
LIMK1P53667 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.56■□□□□ 0.08
LIMK1P53667 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK1P53667 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.56■□□□□ 0.08
LIMK1P53667 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK1P53667 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LIMK1P53667 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.56■□□□□ 0.08
LIMK1P53667 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK1P53667 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 AC005052.1-201ENST00000625181 2492 ntBASIC15.56■□□□□ 0.08
LIMK1P53667 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.56■□□□□ 0.08
LIMK1P53667 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIMK1P53667 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.55■□□□□ 0.08
LIMK1P53667 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIMK1P53667 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
LIMK1P53667 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.55■□□□□ 0.08
LIMK1P53667 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.55■□□□□ 0.08
LIMK1P53667 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIMK1P53667 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIMK1P53667 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.55■□□□□ 0.08
LIMK1P53667 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LIMK1P53667 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIMK1P53667 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIMK1P53667 KRT8P37-201ENST00000451609 1420 ntBASIC15.55■□□□□ 0.08
LIMK1P53667 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIMK1P53667 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms