Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGB1P09429 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGB1P09429 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGB1P09429 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGB1P09429 AC093028.1-201ENST00000622998 982 ntBASIC18.63■□□□□ 0.57
HMGB1P09429 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGB1P09429 KRT18P28-201ENST00000453838 1332 ntBASIC18.63■□□□□ 0.57
HMGB1P09429 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HMGB1P09429 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGB1P09429 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
HMGB1P09429 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HMGB1P09429 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGB1P09429 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGB1P09429 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGB1P09429 RN7SL618P-201ENST00000477850 296 ntBASIC18.62■□□□□ 0.57
HMGB1P09429 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.62■□□□□ 0.57
HMGB1P09429 SLED1-202ENST00000512051 380 ntBASIC18.62■□□□□ 0.57
HMGB1P09429 AC027369.6-201ENST00000525520 931 ntBASIC18.62■□□□□ 0.57
HMGB1P09429 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.62■□□□□ 0.57
HMGB1P09429 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.62■□□□□ 0.57
HMGB1P09429 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGB1P09429 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGB1P09429 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 AC112693.3-201ENST00000624819 1983 ntBASIC18.62■□□□□ 0.57
HMGB1P09429 AL109954.1-202ENST00000564051 2148 ntBASIC18.62■□□□□ 0.57
HMGB1P09429 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB1P09429 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGB1P09429 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HMGB1P09429 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
HMGB1P09429 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB1P09429 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HMGB1P09429 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB1P09429 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 AC087499.5-201ENST00000452760 1342 ntBASIC18.61■□□□□ 0.57
HMGB1P09429 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 RPL5P21-201ENST00000404620 815 ntBASIC18.61■□□□□ 0.57
HMGB1P09429 AC074338.1-201ENST00000416825 156 ntBASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms