Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TM9SF3Q9HD45 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
TM9SF3Q9HD45 AC092850.2-201ENST00000623821 2697 ntBASIC15.83■□□□□ 0.13
TM9SF3Q9HD45 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TM9SF3Q9HD45 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
TM9SF3Q9HD45 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TM9SF3Q9HD45 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AC004987.2-201ENST00000395959 1148 ntBASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 MIR4259-201ENST00000584466 101 ntBASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AC015936.2-201ENST00000593177 259 ntBASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AL691432.1-201ENST00000596308 1422 ntBASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
TM9SF3Q9HD45 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 AC132872.4-202ENST00000622924 2756 ntBASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 AC022494.1-201ENST00000466044 728 ntBASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 RN7SL399P-201ENST00000471648 279 ntBASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 ME2P1-201ENST00000426028 1970 ntBASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.82■□□□□ 0.12
TM9SF3Q9HD45 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms