Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.45■□□□□ 0.22
ATG4AQ8WYN0 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 MIR346-201ENST00000362234 95 ntBASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SPDYE11-202ENST00000450699 704 ntBASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SPDYE9P-201ENST00000570642 692 ntBASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SPDYE10P-202ENST00000612005 668 ntBASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SPDYE8P-202ENST00000612377 668 ntBASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 KRT8P37-201ENST00000451609 1420 ntBASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
ATG4AQ8WYN0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 KRT8P44-201ENST00000441609 1350 ntBASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 HLA-H-201ENST00000383620 1096 ntBASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 FAM86C2P-203ENST00000528684 1004 ntBASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 AL450472.2-201ENST00000603663 1156 ntBASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ATG4AQ8WYN0 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms