Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 KRT8P14-201ENST00000414254 1442 ntBASIC11.09□□□□□ -0.63
PRKDCP78527 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 AC244197.1-201ENST00000456494 951 ntBASIC11.09□□□□□ -0.63
PRKDCP78527 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 AC093752.3-201ENST00000567343 901 ntBASIC11.09□□□□□ -0.63
PRKDCP78527 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 OR10B1P-201ENST00000601666 907 ntBASIC11.09□□□□□ -0.63
PRKDCP78527 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC11.09□□□□□ -0.63
PRKDCP78527 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.63
PRKDCP78527 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.63
PRKDCP78527 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.63
PRKDCP78527 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
PRKDCP78527 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC11.08□□□□□ -0.64
PRKDCP78527 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC11.08□□□□□ -0.64
PRKDCP78527 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC11.08□□□□□ -0.64
PRKDCP78527 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC11.08□□□□□ -0.64
PRKDCP78527 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC11.08□□□□□ -0.64
PRKDCP78527 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 AC022188.1-201ENST00000620960 1664 ntBASIC11.08□□□□□ -0.64
PRKDCP78527 AC144522.1-201ENST00000625111 1658 ntBASIC11.08□□□□□ -0.64
PRKDCP78527 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC11.08□□□□□ -0.64
PRKDCP78527 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC11.08□□□□□ -0.64
PRKDCP78527 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC11.08□□□□□ -0.64
PRKDCP78527 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 POLD4-208ENST00000532830 904 ntTSL 3 BASIC11.08□□□□□ -0.64
PRKDCP78527 NEU3-207ENST00000534628 746 ntTSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC11.08□□□□□ -0.64
PRKDCP78527 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC11.08□□□□□ -0.64
PRKDCP78527 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC11.08□□□□□ -0.64
PRKDCP78527 RNF216P1-203ENST00000404404 2427 ntBASIC11.08□□□□□ -0.64
PRKDCP78527 INE2-201ENST00000630399 1874 ntBASIC11.08□□□□□ -0.64
PRKDCP78527 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
PRKDCP78527 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
PRKDCP78527 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 AC108724.1-201ENST00000481669 352 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC11.07□□□□□ -0.64
PRKDCP78527 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 AC090857.1-201ENST00000527400 390 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC11.07□□□□□ -0.64
PRKDCP78527 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC11.07□□□□□ -0.64
PRKDCP78527 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC11.07□□□□□ -0.64
PRKDCP78527 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC11.07□□□□□ -0.64
PRKDCP78527 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC11.07□□□□□ -0.64
PRKDCP78527 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
PRKDCP78527 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms