Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
HDAC4P56524 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HDAC4P56524 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.56■□□□□ 0.24
HDAC4P56524 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HDAC4P56524 AC136604.1-201ENST00000418535 575 ntBASIC16.56■□□□□ 0.24
HDAC4P56524 AC092580.3-201ENST00000430932 139 ntBASIC16.56■□□□□ 0.24
HDAC4P56524 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.56■□□□□ 0.24
HDAC4P56524 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.56■□□□□ 0.24
HDAC4P56524 AC067863.1-201ENST00000494933 530 ntBASIC16.56■□□□□ 0.24
HDAC4P56524 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 AC069120.2-201ENST00000524091 540 ntBASIC16.56■□□□□ 0.24
HDAC4P56524 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.56■□□□□ 0.24
HDAC4P56524 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HDAC4P56524 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.56■□□□□ 0.24
HDAC4P56524 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC4P56524 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
HDAC4P56524 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
HDAC4P56524 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.55■□□□□ 0.24
HDAC4P56524 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.55■□□□□ 0.24
HDAC4P56524 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HDAC4P56524 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HDAC4P56524 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HDAC4P56524 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HDAC4P56524 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
HDAC4P56524 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.55■□□□□ 0.24
HDAC4P56524 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.55■□□□□ 0.24
HDAC4P56524 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.55■□□□□ 0.24
HDAC4P56524 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.55■□□□□ 0.24
HDAC4P56524 AC073592.8-201ENST00000624126 511 ntBASIC16.55■□□□□ 0.24
HDAC4P56524 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HDAC4P56524 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HDAC4P56524 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.55■□□□□ 0.24
HDAC4P56524 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.55■□□□□ 0.24
HDAC4P56524 AL607033.1-201ENST00000623900 1599 ntBASIC16.55■□□□□ 0.24
HDAC4P56524 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HDAC4P56524 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDAC4P56524 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
HDAC4P56524 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.54■□□□□ 0.24
HDAC4P56524 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HDAC4P56524 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.54■□□□□ 0.24
HDAC4P56524 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HDAC4P56524 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.54■□□□□ 0.24
HDAC4P56524 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HDAC4P56524 DUX4L27-201ENST00000554796 1261 ntBASIC16.54■□□□□ 0.24
HDAC4P56524 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.54■□□□□ 0.24
HDAC4P56524 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
HDAC4P56524 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HDAC4P56524 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HDAC4P56524 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDAC4P56524 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms