Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
MSX2P35548 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.19■□□□□ 0.02
MSX2P35548 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 AC140479.7-201ENST00000636301 2332 ntBASIC15.18■□□□□ 0.02
MSX2P35548 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
MSX2P35548 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 AC127383.1-201ENST00000444697 1800 ntBASIC15.18■□□□□ 0.02
MSX2P35548 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 AC073621.1-201ENST00000392730 636 ntBASIC15.18■□□□□ 0.02
MSX2P35548 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 AP002469.2-201ENST00000531724 424 ntBASIC15.18■□□□□ 0.02
MSX2P35548 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.18■□□□□ 0.02
MSX2P35548 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 AC006557.2-201ENST00000592985 1240 ntBASIC15.18■□□□□ 0.02
MSX2P35548 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.18■□□□□ 0.02
MSX2P35548 ACTL9-202ENST00000612068 1252 ntBASIC15.18■□□□□ 0.02
MSX2P35548 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
MSX2P35548 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.18■□□□□ 0.02
MSX2P35548 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 AC148477.4-201ENST00000613430 1793 ntBASIC15.18■□□□□ 0.02
MSX2P35548 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.18■□□□□ 0.02
MSX2P35548 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSX2P35548 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 AC126365.1-201ENST00000578585 1514 ntBASIC15.17■□□□□ 0.02
MSX2P35548 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.17■□□□□ 0.02
MSX2P35548 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.17■□□□□ 0.02
MSX2P35548 AC026396.1-201ENST00000419388 421 ntBASIC15.17■□□□□ 0.02
MSX2P35548 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.17■□□□□ 0.02
MSX2P35548 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.17■□□□□ 0.02
MSX2P35548 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.17■□□□□ 0.02
MSX2P35548 OR7E47P-204ENST00000575924 449 ntBASIC15.17■□□□□ 0.02
MSX2P35548 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MSX2P35548 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
MSX2P35548 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 GRK6P1-201ENST00000400595 1711 ntBASIC15.17■□□□□ 0.02
MSX2P35548 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.17■□□□□ 0.02
MSX2P35548 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms