Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BLOC1S4Q9NUP1 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 C18orf15-201ENST00000623680 2534 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 MRPS18AP1-201ENST00000414458 589 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 AC114501.2-201ENST00000439631 535 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 CYMP-203ENST00000474680 1263 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 AC008738.7-201ENST00000609744 511 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 AC004840.1-201ENST00000636359 365 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 AC144831.1-201ENST00000573312 2656 ntBASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
BLOC1S4Q9NUP1 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 AC004461.2-201ENST00000629517 803 ntBASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BLOC1S4Q9NUP1 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
BLOC1S4Q9NUP1 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms