Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
VRK1Q99986 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
VRK1Q99986 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
VRK1Q99986 MIR943-201ENST00000401286 94 ntBASIC14.1□□□□□ -0.15
VRK1Q99986 FAM8A3P-201ENST00000427218 844 ntBASIC14.1□□□□□ -0.15
VRK1Q99986 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.1□□□□□ -0.15
VRK1Q99986 GPS2P2-201ENST00000430745 888 ntBASIC14.1□□□□□ -0.15
VRK1Q99986 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.1□□□□□ -0.15
VRK1Q99986 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.1□□□□□ -0.15
VRK1Q99986 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.1□□□□□ -0.15
VRK1Q99986 KLF2P3-201ENST00000451977 1087 ntBASIC14.1□□□□□ -0.15
VRK1Q99986 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.1□□□□□ -0.15
VRK1Q99986 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.1□□□□□ -0.15
VRK1Q99986 IGHV3-42-201ENST00000520410 361 ntBASIC14.1□□□□□ -0.15
VRK1Q99986 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.1□□□□□ -0.15
VRK1Q99986 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.1□□□□□ -0.15
VRK1Q99986 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.1□□□□□ -0.15
VRK1Q99986 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
VRK1Q99986 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.1□□□□□ -0.15
VRK1Q99986 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
VRK1Q99986 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
VRK1Q99986 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VRK1Q99986 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
VRK1Q99986 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.09□□□□□ -0.15
VRK1Q99986 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
VRK1Q99986 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.09□□□□□ -0.15
VRK1Q99986 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 AC107890.1-201ENST00000422478 521 ntBASIC14.09□□□□□ -0.15
VRK1Q99986 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.09□□□□□ -0.15
VRK1Q99986 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 AL512356.2-201ENST00000546955 174 ntBASIC14.09□□□□□ -0.15
VRK1Q99986 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.09□□□□□ -0.15
VRK1Q99986 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.09□□□□□ -0.15
VRK1Q99986 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.09□□□□□ -0.15
VRK1Q99986 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
VRK1Q99986 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.09□□□□□ -0.15
VRK1Q99986 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.09□□□□□ -0.15
VRK1Q99986 AC008677.1-201ENST00000519230 1561 ntBASIC14.09□□□□□ -0.15
VRK1Q99986 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VRK1Q99986 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.09□□□□□ -0.15
VRK1Q99986 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
VRK1Q99986 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
VRK1Q99986 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
VRK1Q99986 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
VRK1Q99986 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
VRK1Q99986 LINC00895-201ENST00000629028 1637 ntBASIC14.08□□□□□ -0.15
VRK1Q99986 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms