Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL645939.2-201ENST00000427340 991 ntBASIC15.28■□□□□ 0.04
VMP1Q96GC9 GPS2P2-201ENST00000430745 888 ntBASIC15.28■□□□□ 0.04
VMP1Q96GC9 AC109322.1-201ENST00000524499 1264 ntBASIC15.28■□□□□ 0.04
VMP1Q96GC9 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 AC093028.1-201ENST00000622998 982 ntBASIC15.28■□□□□ 0.04
VMP1Q96GC9 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 CICP13-201ENST00000422015 2789 ntBASIC15.28■□□□□ 0.04
VMP1Q96GC9 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 SPDYE7P-202ENST00000420373 878 ntBASIC15.27■□□□□ 0.04
VMP1Q96GC9 AC093724.1-201ENST00000448659 1027 ntBASIC15.27■□□□□ 0.04
VMP1Q96GC9 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 ALG1L8P-201ENST00000533887 760 ntBASIC15.27■□□□□ 0.04
VMP1Q96GC9 AL512356.2-201ENST00000546955 174 ntBASIC15.27■□□□□ 0.04
VMP1Q96GC9 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VMP1Q96GC9 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 SPTSSB-204ENST00000617024 1292 ntBASIC15.27■□□□□ 0.04
VMP1Q96GC9 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.27■□□□□ 0.04
VMP1Q96GC9 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.27■□□□□ 0.03
VMP1Q96GC9 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.27■□□□□ 0.03
VMP1Q96GC9 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VMP1Q96GC9 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
VMP1Q96GC9 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.27■□□□□ 0.03
VMP1Q96GC9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VMP1Q96GC9 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VMP1Q96GC9 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 HLA-H-201ENST00000383620 1096 ntBASIC15.26■□□□□ 0.03
VMP1Q96GC9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VMP1Q96GC9 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 AC098859.1-201ENST00000502915 1238 ntBASIC15.26■□□□□ 0.03
VMP1Q96GC9 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 AC026150.2-201ENST00000564693 1156 ntBASIC15.26■□□□□ 0.03
VMP1Q96GC9 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.26■□□□□ 0.03
VMP1Q96GC9 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms