Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 AC243562.2-201ENST00000561247 970 ntBASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 LINC02560-201ENST00000596379 459 ntBASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 TEX28P1-201ENST00000613479 1221 ntBASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 TEX28P2-201ENST00000617764 1221 ntBASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4CQ96CF2 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 SERBP1P5-201ENST00000510079 1181 ntBASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 AL079307.3-201ENST00000556114 283 ntBASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4CQ96CF2 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms