Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.05■□□□□ 0.48
ERCC4Q92889 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.05■□□□□ 0.48
ERCC4Q92889 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.05■□□□□ 0.48
ERCC4Q92889 AC245100.5-201ENST00000452108 331 ntBASIC18.05■□□□□ 0.48
ERCC4Q92889 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
ERCC4Q92889 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.05■□□□□ 0.48
ERCC4Q92889 AC068137.2-201ENST00000605408 478 ntBASIC18.05■□□□□ 0.48
ERCC4Q92889 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.05■□□□□ 0.48
ERCC4Q92889 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
ERCC4Q92889 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.05■□□□□ 0.48
ERCC4Q92889 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.05■□□□□ 0.48
ERCC4Q92889 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.05■□□□□ 0.48
ERCC4Q92889 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
ERCC4Q92889 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ERCC4Q92889 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.04■□□□□ 0.48
ERCC4Q92889 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 IL9RP2-201ENST00000423948 1312 ntBASIC18.04■□□□□ 0.48
ERCC4Q92889 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.04■□□□□ 0.48
ERCC4Q92889 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.04■□□□□ 0.48
ERCC4Q92889 AC074386.1-202ENST00000463561 864 ntBASIC18.04■□□□□ 0.48
ERCC4Q92889 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.04■□□□□ 0.48
ERCC4Q92889 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.04■□□□□ 0.48
ERCC4Q92889 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.04■□□□□ 0.48
ERCC4Q92889 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 AC099063.4-201ENST00000641099 1602 ntBASIC18.04■□□□□ 0.48
ERCC4Q92889 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ERCC4Q92889 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
ERCC4Q92889 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
ERCC4Q92889 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
ERCC4Q92889 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC18.03■□□□□ 0.48
ERCC4Q92889 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC4Q92889 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.03■□□□□ 0.48
ERCC4Q92889 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC4Q92889 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.03■□□□□ 0.48
ERCC4Q92889 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
ERCC4Q92889 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
ERCC4Q92889 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ERCC4Q92889 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.03■□□□□ 0.48
ERCC4Q92889 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC4Q92889 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC4Q92889 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.03■□□□□ 0.48
ERCC4Q92889 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC4Q92889 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.03■□□□□ 0.48
ERCC4Q92889 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
ERCC4Q92889 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms