Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC9.53□□□□□ -0.88
HSPG2P98160 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
HSPG2P98160 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC9.53□□□□□ -0.88
HSPG2P98160 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC9.53□□□□□ -0.88
HSPG2P98160 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC9.53□□□□□ -0.88
HSPG2P98160 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC9.52□□□□□ -0.88
HSPG2P98160 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
HSPG2P98160 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
HSPG2P98160 AC136759.1-202ENST00000530858 2194 ntBASIC9.52□□□□□ -0.88
HSPG2P98160 LRRFIP1P1-201ENST00000498774 2246 ntBASIC9.52□□□□□ -0.88
HSPG2P98160 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
HSPG2P98160 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
HSPG2P98160 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC9.52□□□□□ -0.88
HSPG2P98160 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC9.52□□□□□ -0.88
HSPG2P98160 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC9.52□□□□□ -0.88
HSPG2P98160 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC9.52□□□□□ -0.88
HSPG2P98160 HLA-J-204ENST00000495278 958 ntBASIC9.52□□□□□ -0.88
HSPG2P98160 MESTP3-201ENST00000503460 968 ntBASIC9.52□□□□□ -0.88
HSPG2P98160 AC006548.2-201ENST00000605217 529 ntBASIC9.52□□□□□ -0.88
HSPG2P98160 AC018695.6-201ENST00000614011 534 ntBASIC9.52□□□□□ -0.88
HSPG2P98160 AMT-204ENST00000427987 1646 ntTSL 5 BASIC9.52□□□□□ -0.88
HSPG2P98160 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC9.52□□□□□ -0.88
HSPG2P98160 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC9.52□□□□□ -0.89
HSPG2P98160 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC9.52□□□□□ -0.89
HSPG2P98160 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 COX20P1-201ENST00000366529 357 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 KLF2P1-201ENST00000447438 1042 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 AC130709.1-201ENST00000484779 1212 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 AC093909.3-201ENST00000504783 336 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC9.52□□□□□ -0.89
HSPG2P98160 OR10B1P-201ENST00000601666 907 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 AC107464.3-201ENST00000609172 737 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 ENPP7P8-202ENST00000527856 1345 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 AC020916.1-201ENST00000587762 1774 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 AP001282.1-201ENST00000531301 1499 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 CTSL-202ENST00000342020 933 ntTSL 2 BASIC9.52□□□□□ -0.89
HSPG2P98160 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC9.52□□□□□ -0.89
HSPG2P98160 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 RPL7P35-201ENST00000446943 740 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 AC114812.1-204ENST00000449669 728 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 BUD31-205ENST00000456893 512 ntTSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC9.52□□□□□ -0.89
HSPG2P98160 IRF3-215ENST00000596822 823 ntTSL 3 BASIC9.52□□□□□ -0.89
HSPG2P98160 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC9.52□□□□□ -0.89
HSPG2P98160 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
HSPG2P98160 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC9.52□□□□□ -0.89
HSPG2P98160 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC9.52□□□□□ -0.89
HSPG2P98160 AC024293.1-201ENST00000467930 498 ntBASIC9.52□□□□□ -0.89
HSPG2P98160 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC9.52□□□□□ -0.89
HSPG2P98160 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC9.52□□□□□ -0.89
HSPG2P98160 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC9.52□□□□□ -0.89
HSPG2P98160 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
HSPG2P98160 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC9.51□□□□□ -0.89
HSPG2P98160 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC9.51□□□□□ -0.89
HSPG2P98160 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 AC144522.1-201ENST00000625111 1658 ntBASIC9.51□□□□□ -0.89
HSPG2P98160 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
HSPG2P98160 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC9.51□□□□□ -0.89
HSPG2P98160 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 THY1-209ENST00000580275 578 ntTSL 3 BASIC9.51□□□□□ -0.89
HSPG2P98160 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
HSPG2P98160 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC9.51□□□□□ -0.89
HSPG2P98160 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
HSPG2P98160 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
HSPG2P98160 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
HSPG2P98160 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms