Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AL662890.1-201ENST00000396818 632 ntBASIC15.62■□□□□ 0.09
LIMK1P53667 NUS1P3-201ENST00000423502 862 ntBASIC15.62■□□□□ 0.09
LIMK1P53667 AC134915.1-201ENST00000426461 574 ntBASIC15.62■□□□□ 0.09
LIMK1P53667 AC012441.1-201ENST00000446669 685 ntBASIC15.62■□□□□ 0.09
LIMK1P53667 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIMK1P53667 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIMK1P53667 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIMK1P53667 AC023310.1-201ENST00000554836 735 ntBASIC15.62■□□□□ 0.09
LIMK1P53667 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.62■□□□□ 0.09
LIMK1P53667 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIMK1P53667 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.62■□□□□ 0.09
LIMK1P53667 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.62■□□□□ 0.09
LIMK1P53667 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.62■□□□□ 0.09
LIMK1P53667 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.62■□□□□ 0.09
LIMK1P53667 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.62■□□□□ 0.09
LIMK1P53667 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.62■□□□□ 0.09
LIMK1P53667 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIMK1P53667 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.62■□□□□ 0.09
LIMK1P53667 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIMK1P53667 AC132872.4-202ENST00000622924 2756 ntBASIC15.62■□□□□ 0.09
LIMK1P53667 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LIMK1P53667 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIMK1P53667 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LIMK1P53667 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LIMK1P53667 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 AL365203.3-201ENST00000609742 2057 ntBASIC15.61■□□□□ 0.09
LIMK1P53667 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
LIMK1P53667 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.61■□□□□ 0.09
LIMK1P53667 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
LIMK1P53667 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.61■□□□□ 0.09
LIMK1P53667 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.61■□□□□ 0.09
LIMK1P53667 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.61■□□□□ 0.09
LIMK1P53667 AC253536.4-201ENST00000440539 267 ntBASIC15.61■□□□□ 0.09
LIMK1P53667 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.61■□□□□ 0.09
LIMK1P53667 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.61■□□□□ 0.09
LIMK1P53667 SCARNA20.5-201ENST00000516991 142 ntBASIC15.61■□□□□ 0.09
LIMK1P53667 MIR4722-201ENST00000578292 60 ntBASIC15.61■□□□□ 0.09
LIMK1P53667 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LIMK1P53667 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.61■□□□□ 0.09
LIMK1P53667 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LIMK1P53667 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LIMK1P53667 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LIMK1P53667 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LIMK1P53667 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.6■□□□□ 0.09
LIMK1P53667 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 INTS4P2-202ENST00000614726 2019 ntBASIC15.6■□□□□ 0.09
LIMK1P53667 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
LIMK1P53667 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.6■□□□□ 0.09
LIMK1P53667 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LIMK1P53667 AC104306.2-201ENST00000451877 341 ntBASIC15.6■□□□□ 0.09
LIMK1P53667 AC091804.1-201ENST00000486888 567 ntBASIC15.6■□□□□ 0.09
LIMK1P53667 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.6■□□□□ 0.09
LIMK1P53667 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 AC124947.2-201ENST00000547118 1133 ntBASIC15.6■□□□□ 0.09
LIMK1P53667 AC105129.2-201ENST00000559536 390 ntBASIC15.6■□□□□ 0.09
LIMK1P53667 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.6■□□□□ 0.09
LIMK1P53667 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.6■□□□□ 0.09
LIMK1P53667 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LIMK1P53667 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 AL008638.5-201ENST00000623814 1298 ntBASIC15.6■□□□□ 0.09
LIMK1P53667 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.6■□□□□ 0.09
LIMK1P53667 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.6■□□□□ 0.09
LIMK1P53667 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
LIMK1P53667 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms