Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
BDNFP23560 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.68■□□□□ 0.26
BDNFP23560 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.68■□□□□ 0.26
BDNFP23560 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.68■□□□□ 0.26
BDNFP23560 CICP6-201ENST00000457191 2729 ntBASIC16.68■□□□□ 0.26
BDNFP23560 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.68■□□□□ 0.26
BDNFP23560 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
BDNFP23560 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.68■□□□□ 0.26
BDNFP23560 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.68■□□□□ 0.26
BDNFP23560 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.68■□□□□ 0.26
BDNFP23560 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 AL391069.4-201ENST00000609583 481 ntBASIC16.68■□□□□ 0.26
BDNFP23560 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.68■□□□□ 0.26
BDNFP23560 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
BDNFP23560 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
BDNFP23560 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BDNFP23560 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.68■□□□□ 0.26
BDNFP23560 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
BDNFP23560 CLK3P2-201ENST00000427566 1453 ntBASIC16.67■□□□□ 0.26
BDNFP23560 AC138969.3-201ENST00000546612 1459 ntBASIC16.67■□□□□ 0.26
BDNFP23560 AC138932.2-201ENST00000548268 1459 ntBASIC16.67■□□□□ 0.26
BDNFP23560 AC126755.4-201ENST00000549796 1459 ntBASIC16.67■□□□□ 0.26
BDNFP23560 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
BDNFP23560 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.67■□□□□ 0.26
BDNFP23560 TOMM22P5-201ENST00000416399 439 ntBASIC16.67■□□□□ 0.26
BDNFP23560 NME2P1-201ENST00000426182 414 ntBASIC16.67■□□□□ 0.26
BDNFP23560 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.67■□□□□ 0.26
BDNFP23560 GAPDHP21-201ENST00000450301 1010 ntBASIC16.67■□□□□ 0.26
BDNFP23560 RN7SL399P-201ENST00000471648 279 ntBASIC16.67■□□□□ 0.26
BDNFP23560 ELK1P1-201ENST00000485699 580 ntBASIC16.67■□□□□ 0.26
BDNFP23560 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.67■□□□□ 0.26
BDNFP23560 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.67■□□□□ 0.26
BDNFP23560 RRP7BP-205ENST00000566851 833 ntBASIC16.67■□□□□ 0.26
BDNFP23560 CTBP2P3-201ENST00000585629 1255 ntBASIC16.67■□□□□ 0.26
BDNFP23560 AC239800.4-201ENST00000603712 296 ntBASIC16.67■□□□□ 0.26
BDNFP23560 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
BDNFP23560 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
BDNFP23560 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.67■□□□□ 0.26
BDNFP23560 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
BDNFP23560 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
BDNFP23560 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
BDNFP23560 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 AC046158.3-201ENST00000624947 2558 ntBASIC16.66■□□□□ 0.26
BDNFP23560 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms