Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.215e-6■□□□□ 10.5
YBX3P16989 ERBIN-217ENST00000515185 377 ntTSL 25.42□□□□□ -1.541e-8■□□□□ 10.5
YBX3P16989 GOT2-205ENST00000496461 981 ntTSL 218.7■□□□□ 0.581e-6■□□□□ 10.5
YBX3P16989 GOT2-207ENST00000568368 516 ntTSL 418.36■□□□□ 0.531e-6■□□□□ 10.5
YBX3P16989 GOT2-206ENST00000564400 983 ntTSL 315.98■□□□□ 0.151e-6■□□□□ 10.5
YBX3P16989 ZYX-205ENST00000446634 926 ntTSL 525.83■■□□□ 1.731e-9■□□□□ 10.5
YBX3P16989 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.651e-9■□□□□ 10.5
YBX3P16989 ZYX-202ENST00000354434 2050 ntAPPRIS ALT2 TSL 215.75■□□□□ 0.111e-9■□□□□ 10.5
YBX3P16989 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.11e-9■□□□□ 10.5
YBX3P16989 SEMA4B-203ENST00000558051 552 ntTSL 421.88■■□□□ 1.091e-6■□□□□ 10.5
YBX3P16989 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.517e-7■□□□□ 10.5
YBX3P16989 C8orf33-204ENST00000530455 2676 ntTSL 1 (best)17.72■□□□□ 0.437e-7■□□□□ 10.5
YBX3P16989 SLC44A1-206ENST00000607692 586 ntTSL 513.23□□□□□ -0.293e-6■□□□□ 10.5
YBX3P16989 SLC25A23-204ENST00000593600 834 ntTSL 321.34■■□□□ 1.012e-6■□□□□ 10.5
YBX3P16989 SLC25A23-211ENST00000600682 1210 ntTSL 220.68■□□□□ 0.92e-6■□□□□ 10.5
YBX3P16989 SLC25A23-210ENST00000598908 888 ntTSL 317.48■□□□□ 0.392e-6■□□□□ 10.5
YBX3P16989 GNL2-201ENST00000373062 2334 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.911e-6■□□□□ 10.5
YBX3P16989 DNM2-207ENST00000586939 551 ntTSL 415.08■□□□□ 07e-11■□□□□ 10.5
YBX3P16989 DNM2-220ENST00000591819 597 ntTSL 412.96□□□□□ -0.337e-11■□□□□ 10.5
YBX3P16989 GNAS-228ENST00000469431 702 ntTSL 535.09■■■■□ 3.212e-7■□□□□ 10.5
YBX3P16989 RNF213-203ENST00000427003 3552 ntTSL 1 (best)7.82□□□□□ -1.162e-6■□□□□ 10.5
YBX3P16989 RNF213-210ENST00000560083 4212 ntTSL 27.76□□□□□ -1.172e-6■□□□□ 10.5
YBX3P16989 OAZ1-204ENST00000588673 780 ntTSL 326.76■■□□□ 1.872e-29■□□□□ 10.5
YBX3P16989 EIF4G2-229ENST00000534272 591 ntTSL 36.04□□□□□ -1.447e-16■□□□□ 10.5
YBX3P16989 EIF4G2-213ENST00000528839 702 ntTSL 55.94□□□□□ -1.467e-16■□□□□ 10.5
YBX3P16989 SEC24D-203ENST00000502526 351 ntTSL 25.52□□□□□ -1.533e-6■□□□□ 10.5
YBX3P16989 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.275e-9■□□□□ 10.5
YBX3P16989 GUSB-213ENST00000479038 452 ntTSL 322.5■■□□□ 1.195e-9■□□□□ 10.5
YBX3P16989 GUSB-208ENST00000465785 625 ntTSL 218.13■□□□□ 0.495e-9■□□□□ 10.5
YBX3P16989 GUSB-210ENST00000475316 505 ntTSL 312.23□□□□□ -0.455e-9■□□□□ 10.5
YBX3P16989 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.491e-8■□□□□ 10.5
YBX3P16989 NDUFA7-206ENST00000602059 528 ntTSL 417.46■□□□□ 0.396e-11■□□□□ 10.5
YBX3P16989 NDUFA7-205ENST00000601258 547 ntTSL 213.26□□□□□ -0.296e-11■□□□□ 10.5
YBX3P16989 LRRC42-204ENST00000444987 1044 ntTSL 524.62■■□□□ 1.535e-8■□□□□ 10.5
YBX3P16989 LRRC42-202ENST00000371368 838 ntTSL 322.93■■□□□ 1.265e-8■□□□□ 10.5
YBX3P16989 PIH1D1-222ENST00000601825 381 ntTSL 321.78■■□□□ 1.086e-12■□□□□ 10.5
YBX3P16989 CARHSP1-209ENST00000567626 350 ntTSL 518.98■□□□□ 0.636e-11■□□□□ 10.5
YBX3P16989 GRK2-205ENST00000526572 789 ntTSL 316.99■□□□□ 0.315e-10■□□□□ 10.5
YBX3P16989 RPS28-201ENST00000417088 334 ntTSL 220.39■□□□□ 0.851e-18■□□□□ 10.5
YBX3P16989 MCM7-212ENST00000493352 533 ntTSL 216.25■□□□□ 0.192e-12■□□□□ 10.5
YBX3P16989 PRELID3B-204ENST00000466051 612 ntTSL 220.59■□□□□ 0.891e-8■□□□□ 10.5
YBX3P16989 RPL26-202ENST00000578069 456 ntTSL 27.22□□□□□ -1.254e-21■□□□□ 10.5
YBX3P16989 RPL26-211ENST00000584441 328 ntTSL 35.98□□□□□ -1.454e-21■□□□□ 10.5
YBX3P16989 SUPT20H-221ENST00000493537 2149 ntTSL 54.55□□□□□ -1.681e-6■□□□□ 10.5
YBX3P16989 RPL27-207ENST00000590864 569 ntTSL 2 BASIC6.88□□□□□ -1.311e-20■□□□□ 10.5
YBX3P16989 ASAH1-219ENST00000636033 1940 ntTSL 524.37■■□□□ 1.492e-7■□□□□ 10.5
YBX3P16989 ASAH1-239ENST00000636920 1989 ntTSL 520.66■□□□□ 0.92e-7■□□□□ 10.5
YBX3P16989 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.7■□□□□ 0.742e-7■□□□□ 10.5
YBX3P16989 ASAH1-216ENST00000635944 1960 ntTSL 519.68■□□□□ 0.742e-7■□□□□ 10.5
YBX3P16989 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC19.6■□□□□ 0.732e-7■□□□□ 10.5
YBX3P16989 ASAH1-236ENST00000636815 1724 ntTSL 519.57■□□□□ 0.722e-7■□□□□ 10.5
YBX3P16989 ASAH1-233ENST00000636701 2158 ntTSL 519.12■□□□□ 0.652e-7■□□□□ 10.5
YBX3P16989 ASAH1-243ENST00000637095 2048 ntTSL 518.47■□□□□ 0.552e-7■□□□□ 10.5
YBX3P16989 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.512e-7■□□□□ 10.5
YBX3P16989 ASAH1-217ENST00000635998 1845 ntTSL 518.14■□□□□ 0.492e-7■□□□□ 10.5
YBX3P16989 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.93■□□□□ 0.462e-7■□□□□ 10.5
YBX3P16989 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.76■□□□□ 0.432e-7■□□□□ 10.5
YBX3P16989 ASAH1-228ENST00000636494 1975 ntTSL 517.19■□□□□ 0.342e-7■□□□□ 10.5
YBX3P16989 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.272e-7■□□□□ 10.5
YBX3P16989 ASAH1-222ENST00000636160 2328 ntTSL 516.65■□□□□ 0.262e-7■□□□□ 10.5
YBX3P16989 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.3■□□□□ 0.22e-7■□□□□ 10.5
YBX3P16989 ASAH1-241ENST00000637013 2649 ntTSL 516.11■□□□□ 0.172e-7■□□□□ 10.5
YBX3P16989 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.02■□□□□ 0.152e-7■□□□□ 10.5
YBX3P16989 ASAH1-247ENST00000637429 2558 ntTSL 514.69□□□□□ -0.062e-7■□□□□ 10.5
YBX3P16989 ASAH1-245ENST00000637244 3151 ntTSL 1 (best)14.68□□□□□ -0.062e-7■□□□□ 10.5
YBX3P16989 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.112e-7■□□□□ 10.5
YBX3P16989 ASAH1-269ENST00000638069 3068 ntTSL 512.51□□□□□ -0.412e-7■□□□□ 10.5
YBX3P16989 ASAH1-202ENST00000314146 1690 ntTSL 1 (best) BASIC12.31□□□□□ -0.442e-7■□□□□ 10.5
YBX3P16989 ASAH1-248ENST00000637484 2304 ntTSL 58.99□□□□□ -0.972e-7■□□□□ 10.5
YBX3P16989 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC8.33□□□□□ -1.082e-7■□□□□ 10.5
YBX3P16989 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC8.32□□□□□ -1.082e-7■□□□□ 10.5
YBX3P16989 ASAH1-220ENST00000636050 2546 ntTSL 58.04□□□□□ -1.122e-7■□□□□ 10.5
YBX3P16989 ASAH1-253ENST00000637609 4981 ntTSL 57.87□□□□□ -1.152e-7■□□□□ 10.5
YBX3P16989 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.57□□□□□ -1.22e-7■□□□□ 10.5
YBX3P16989 UBC-208ENST00000540700 627 ntTSL 222.34■■□□□ 1.174e-14■□□□□ 10.5
YBX3P16989 BCCIP-205ENST00000478798 1461 ntTSL 25.54□□□□□ -1.524e-10■□□□□ 10.5
YBX3P16989 SF3B1-209ENST00000479532 587 ntTSL 27.56□□□□□ -1.27e-7■□□□□ 10.5
YBX3P16989 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC23.07■■□□□ 1.283e-26■□□□□ 10.5
YBX3P16989 MDH1-211ENST00000484538 910 ntTSL 29.37□□□□□ -0.916e-9■□□□□ 10.5
YBX3P16989 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.997e-8■□□□□ 10.5
YBX3P16989 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.027e-8■□□□□ 10.5
YBX3P16989 COPB1-203ENST00000525214 566 ntTSL 28.92□□□□□ -0.984e-10■□□□□ 10.5
YBX3P16989 IMPDH2-211ENST00000491610 844 ntTSL 513.48□□□□□ -0.256e-10■□□□□ 10.5
YBX3P16989 CERS2-202ENST00000345896 2170 ntTSL 231.88■■■□□ 2.696e-10■□□□□ 10.5
YBX3P16989 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.156e-10■□□□□ 10.5
YBX3P16989 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.066e-10■□□□□ 10.5
YBX3P16989 CERS2-214ENST00000561294 1803 ntTSL 5 BASIC13.87□□□□□ -0.196e-10■□□□□ 10.5
YBX3P16989 PIGS-211ENST00000582615 699 ntTSL 215.36■□□□□ 0.051e-6■□□□□ 10.5
YBX3P16989 PIGS-204ENST00000465444 578 ntTSL 514.77□□□□□ -0.051e-6■□□□□ 10.5
YBX3P16989 PIGS-210ENST00000580968 372 ntTSL 310.12□□□□□ -0.791e-6■□□□□ 10.5
YBX3P16989 CSNK1D-224ENST00000584672 401 ntTSL 320.43■□□□□ 0.862e-6■□□□□ 10.5
YBX3P16989 CSNK1D-208ENST00000578501 1124 ntTSL 218.28■□□□□ 0.522e-6■□□□□ 10.5
YBX3P16989 CSNK1D-220ENST00000581737 631 ntTSL 217.98■□□□□ 0.472e-6■□□□□ 10.5
YBX3P16989 CSNK1D-222ENST00000584377 2891 ntTSL 213.62□□□□□ -0.232e-6■□□□□ 10.5
YBX3P16989 MDH1-216ENST00000544381 1346 ntTSL 2 BASIC12.8□□□□□ -0.369e-10■□□□□ 10.5
YBX3P16989 MDH1-215ENST00000539945 1443 ntTSL 2 BASIC11□□□□□ -0.659e-10■□□□□ 10.5
YBX3P16989 MDH1-201ENST00000233114 1650 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.89e-10■□□□□ 10.5
YBX3P16989 SND1-201ENST00000354725 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.471e-9■□□□□ 10.5
YBX3P16989 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC32.26■■■□□ 2.752e-6■□□□□ 10.5
YBX3P16989 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC27.52■■■□□ 22e-6■□□□□ 10.5
Retrieved 100 of 29,075 protein–RNA pairs in 209 ms