RNA–Protein interactions for RNA: ENST00000584377.5

CSNK1D-222, Transcript of casein kinase 1 delta, humanhuman

TSL 2

Gene CSNK1D, Length 2,891 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-222ENST00000584377 NISCHQ9Y2I1 1504 aa27.8■■■□□ 2.04
CSNK1D-222ENST00000584377 CCDC180Q9P1Z9 1646 aa23.73■■□□□ 1.39
CSNK1D-222ENST00000584377 SHROOM4Q9ULL8 1493 aa23.5■■□□□ 1.35
CSNK1D-222ENST00000584377 ZCCHC6Q5VYS8 1495 aaKnown RBP23.5■■□□□ 1.35
CSNK1D-222ENST00000584377 DCAF8L2P0C7V8 631 aa23.02■■□□□ 1.28
CSNK1D-222ENST00000584377 SUPT5HO00267 1087 aaKnown RBP22.99■■□□□ 1.27
CSNK1D-222ENST00000584377 DCAF1Q9Y4B6 1507 aa22.86■■□□□ 1.25
CSNK1D-222ENST00000584377 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
CSNK1D-222ENST00000584377 MYO15BQ96JP2 1530 aa22.27■■□□□ 1.16
CSNK1D-222ENST00000584377 SCRIBQ14160 1630 aa22.16■■□□□ 1.14
CSNK1D-222ENST00000584377 ABCC9O60706 1549 aa22.14■■□□□ 1.13
CSNK1D-222ENST00000584377 NACADO15069 1562 aa21.99■■□□□ 1.11
CSNK1D-222ENST00000584377 RSF1Q96T23 1441 aaPredicted RBP21.93■■□□□ 1.1
CSNK1D-222ENST00000584377 RB1CC1Q8TDY2 1594 aa21.68■■□□□ 1.06
CSNK1D-222ENST00000584377 CECR2Q9BXF3 1484 aa21.65■■□□□ 1.06
CSNK1D-222ENST00000584377 LOC105371045A0A1W2PR82 267 aa21.6■■□□□ 1.05
CSNK1D-222ENST00000584377 MROH2BQ7Z745 1585 aa21.58■■□□□ 1.04
CSNK1D-222ENST00000584377 TRIM41Q8WV44 630 aa21.47■■□□□ 1.03
CSNK1D-222ENST00000584377 HRCP23327 699 aa21.46■■□□□ 1.03
CSNK1D-222ENST00000584377 PCGF6Q9BYE7 350 aa21.44■■□□□ 1.02
CSNK1D-222ENST00000584377 WIZO95785 1651 aa21.44■■□□□ 1.02
CSNK1D-222ENST00000584377 BAZ1AQ9NRL2 1556 aaPredicted RBP21.38■■□□□ 1.01
CSNK1D-222ENST00000584377 UNC13AQ9UPW8 1703 aa21.25■□□□□ 0.99
CSNK1D-222ENST00000584377 FAM9AQ8IZU1 332 aaPredicted RBP21.23■□□□□ 0.99
CSNK1D-222ENST00000584377 SMARCA4P51532 1647 aa21.2■□□□□ 0.98
CSNK1D-222ENST00000584377 TOP2AP11388 1531 aaKnown RBP21.15■□□□□ 0.98
CSNK1D-222ENST00000584377 TRIM26Q12899 539 aaPredicted RBP21.11■□□□□ 0.97
CSNK1D-222ENST00000584377 EIF4G1Q04637 1599 aaKnown RBP21.11■□□□□ 0.97
CSNK1D-222ENST00000584377 PELP1Q8IZL8 1130 aaKnown RBP21.11■□□□□ 0.97
CSNK1D-222ENST00000584377 PABPN1Q86U42 306 aaKnown RBP eCLIP21.04■□□□□ 0.963e-7■■■□□ 17.8
CSNK1D-222ENST00000584377 CCDC88BA6NC98 1476 aa21.03■□□□□ 0.96
CSNK1D-222ENST00000584377 BICRAQ9NZM4 1560 aa21.03■□□□□ 0.96
CSNK1D-222ENST00000584377 EHMT2Q96KQ7 1210 aa21.01■□□□□ 0.95
CSNK1D-222ENST00000584377 SMARCA2P51531 1590 aa21.01■□□□□ 0.95
CSNK1D-222ENST00000584377 PPARGC1BQ86YN6 1023 aaKnown RBP20.97■□□□□ 0.95
CSNK1D-222ENST00000584377 ABCC8Q09428 1581 aa20.9■□□□□ 0.94
CSNK1D-222ENST00000584377 PEG3Q9GZU2 1588 aa20.83■□□□□ 0.93
CSNK1D-222ENST00000584377 ATAD2BQ9ULI0 1458 aa20.7■□□□□ 0.9
CSNK1D-222ENST00000584377 SOGA1O94964 1423 aa20.69■□□□□ 0.9
CSNK1D-222ENST00000584377 BAZ1BQ9UIG0 1483 aaKnown RBP20.64■□□□□ 0.89
CSNK1D-222ENST00000584377 EEA1Q15075 1411 aa20.63■□□□□ 0.89
CSNK1D-222ENST00000584377 WRNQ14191 1432 aaPredicted RBP eCLIP20.62■□□□□ 0.89
CSNK1D-222ENST00000584377 ZEB1P37275 1124 aaPredicted RBP20.61■□□□□ 0.89
CSNK1D-222ENST00000584377 CSRNP3Q8WYN3 585 aa20.59■□□□□ 0.89
CSNK1D-222ENST00000584377 RUSC2Q8N2Y8 1516 aa20.57■□□□□ 0.88
CSNK1D-222ENST00000584377 CEP162Q5TB80 1403 aa20.54■□□□□ 0.88
CSNK1D-222ENST00000584377 TNIKQ9UKE5 1360 aa20.54■□□□□ 0.88
CSNK1D-222ENST00000584377 SYNJ1O43426 1573 aa20.49■□□□□ 0.87
CSNK1D-222ENST00000584377 UBTFP17480 764 aaKnown RBP20.48■□□□□ 0.87
CSNK1D-222ENST00000584377 GOLGA3Q08378 1498 aa20.46■□□□□ 0.87
CSNK1D-222ENST00000584377 SCAF1Q9H7N4 1312 aaKnown RBP20.44■□□□□ 0.86
CSNK1D-222ENST00000584377 MYT1Q01538 1121 aa20.37■□□□□ 0.85
CSNK1D-222ENST00000584377 CEP164Q9UPV0 1460 aa20.36■□□□□ 0.85
CSNK1D-222ENST00000584377 NCAPD3P42695 1498 aa20.34■□□□□ 0.85
CSNK1D-222ENST00000584377 HMGXB3Q12766 1538 aa20.33■□□□□ 0.85
CSNK1D-222ENST00000584377 KIF21BO75037 1637 aa20.33■□□□□ 0.84
CSNK1D-222ENST00000584377 TTBK1Q5TCY1 1321 aaPredicted RBP20.31■□□□□ 0.84
CSNK1D-222ENST00000584377 TOP2BQ02880 1626 aa20.29■□□□□ 0.84
CSNK1D-222ENST00000584377 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.26■□□□□ 0.83
CSNK1D-222ENST00000584377 CCER1Q8TC90 406 aaPredicted RBP20.23■□□□□ 0.83
CSNK1D-222ENST00000584377 BIVM-ERCC5R4GMW8 1640 aa20.21■□□□□ 0.83
CSNK1D-222ENST00000584377 CLIP1P30622 1438 aa20.2■□□□□ 0.83
CSNK1D-222ENST00000584377 RAPGEF2Q9Y4G8 1499 aa20.2■□□□□ 0.82
CSNK1D-222ENST00000584377 CFTRP13569 1480 aa20.13■□□□□ 0.81
CSNK1D-222ENST00000584377 VPS8Q8N3P4 1428 aa20.11■□□□□ 0.81
CSNK1D-222ENST00000584377 CUX1P39880 1505 aa20.1■□□□□ 0.81
CSNK1D-222ENST00000584377 RANGAP1P46060 587 aaPredicted RBP20.05■□□□□ 0.8
CSNK1D-222ENST00000584377 PRXQ9BXM0 1461 aa20.05■□□□□ 0.8
CSNK1D-222ENST00000584377 ERICH3Q5RHP9 1530 aa20.04■□□□□ 0.8
CSNK1D-222ENST00000584377 APLP2Q06481 763 aa20.01■□□□□ 0.79
CSNK1D-222ENST00000584377 KIF27Q86VH2 1401 aa20.01■□□□□ 0.79
CSNK1D-222ENST00000584377 PRDM2Q13029 1718 aa19.94■□□□□ 0.78
CSNK1D-222ENST00000584377 CADPSQ9ULU8 1353 aa19.93■□□□□ 0.78
CSNK1D-222ENST00000584377 HNRNPUL2Q1KMD3 747 aaKnown RBP19.9■□□□□ 0.78
CSNK1D-222ENST00000584377 ARAP1Q96P48 1450 aa19.88■□□□□ 0.77
CSNK1D-222ENST00000584377 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
CSNK1D-222ENST00000584377 ACIN1Q9UKV3 1341 aaKnown RBP19.86■□□□□ 0.77
CSNK1D-222ENST00000584377 CUX2O14529 1486 aa19.83■□□□□ 0.76
CSNK1D-222ENST00000584377 IGF1RP08069 1367 aa19.78■□□□□ 0.76
CSNK1D-222ENST00000584377 NEUROD1Q13562 356 aa19.78■□□□□ 0.76
CSNK1D-222ENST00000584377 FGD5Q6ZNL6 1462 aa19.78■□□□□ 0.76
CSNK1D-222ENST00000584377 ARHGAP35Q9NRY4 1499 aa19.74■□□□□ 0.75
CSNK1D-222ENST00000584377 DIEXFQ68CQ4 756 aaKnown RBP19.73■□□□□ 0.75
CSNK1D-222ENST00000584377 FANCD2Q9BXW9 1451 aa19.73■□□□□ 0.75
CSNK1D-222ENST00000584377 KANK4Q5T7N3 995 aaPredicted RBP19.73■□□□□ 0.75
CSNK1D-222ENST00000584377 GTF3C3Q9Y5Q9 886 aa19.7■□□□□ 0.74
CSNK1D-222ENST00000584377 CARMIL1Q5VZK9 1371 aa19.7■□□□□ 0.74
CSNK1D-222ENST00000584377 ZNF316A6NFI3 1004 aaPredicted RBP19.65■□□□□ 0.74
CSNK1D-222ENST00000584377 DNMBPQ6XZF7 1577 aa19.62■□□□□ 0.73
CSNK1D-222ENST00000584377 RRBP1Q9P2E9 1410 aaKnown RBP19.61■□□□□ 0.73
CSNK1D-222ENST00000584377 NESP48681 1621 aa19.6■□□□□ 0.73
CSNK1D-222ENST00000584377 TOPBP1Q92547 1522 aa19.58■□□□□ 0.73
CSNK1D-222ENST00000584377 RAD54L2Q9Y4B4 1467 aa19.57■□□□□ 0.72
CSNK1D-222ENST00000584377 CENPBP07199 599 aaPredicted RBP19.57■□□□□ 0.72
CSNK1D-222ENST00000584377 POLA1P09884 1462 aaPredicted RBP19.57■□□□□ 0.72
CSNK1D-222ENST00000584377 ABCA10Q8WWZ4 1543 aa19.56■□□□□ 0.72
CSNK1D-222ENST00000584377 CCNB3Q8WWL7 1395 aa19.54■□□□□ 0.72
CSNK1D-222ENST00000584377 CLSPNQ9HAW4 1339 aa19.53■□□□□ 0.72
CSNK1D-222ENST00000584377 DHX57Q6P158 1386 aaKnown RBP19.52■□□□□ 0.72
CSNK1D-222ENST00000584377 MAP3K1Q13233 1512 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms