Protein–RNA interactions for Protein: O60294

LCMT2, tRNA wybutosine-synthesizing protein 4, humanhuman

Known RBP Predictions only

Length 686 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LCMT2O60294 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LCMT2O60294 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LCMT2O60294 Z97205.2-201ENST00000564697 1639 ntBASIC15.17■□□□□ 0.02
LCMT2O60294 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LCMT2O60294 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LCMT2O60294 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LCMT2O60294 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.17■□□□□ 0.02
LCMT2O60294 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LCMT2O60294 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LCMT2O60294 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 AC105917.1-201ENST00000506637 2539 ntBASIC15.16■□□□□ 0.02
LCMT2O60294 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 HYMAI-201ENST00000635591 3347 ntBASIC15.16■□□□□ 0.02
LCMT2O60294 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.16■□□□□ 0.02
LCMT2O60294 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.16■□□□□ 0.02
LCMT2O60294 SDHAP3-202ENST00000515467 728 ntBASIC15.16■□□□□ 0.02
LCMT2O60294 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.16■□□□□ 0.02
LCMT2O60294 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.16■□□□□ 0.02
LCMT2O60294 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.16■□□□□ 0.02
LCMT2O60294 AL355385.1-201ENST00000606123 409 ntBASIC15.16■□□□□ 0.02
LCMT2O60294 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.16■□□□□ 0.02
LCMT2O60294 AF228730.6-201ENST00000641497 218 ntBASIC15.16■□□□□ 0.02
LCMT2O60294 AC084121.3-201ENST00000641716 218 ntBASIC15.16■□□□□ 0.02
LCMT2O60294 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
LCMT2O60294 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LCMT2O60294 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.16■□□□□ 0.02
LCMT2O60294 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.15■□□□□ 0.02
LCMT2O60294 AC022144.1-201ENST00000602255 1580 ntBASIC15.15■□□□□ 0.02
LCMT2O60294 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
LCMT2O60294 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.15■□□□□ 0.02
LCMT2O60294 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LCMT2O60294 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.15■□□□□ 0.02
LCMT2O60294 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.15■□□□□ 0.02
LCMT2O60294 UGT1A2P-201ENST00000454886 866 ntBASIC15.15■□□□□ 0.02
LCMT2O60294 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 ZNF890P-202ENST00000530367 1156 ntBASIC15.15■□□□□ 0.02
LCMT2O60294 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
LCMT2O60294 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 AC008738.7-201ENST00000609744 511 ntBASIC15.15■□□□□ 0.02
LCMT2O60294 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.15■□□□□ 0.02
LCMT2O60294 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
LCMT2O60294 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LCMT2O60294 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms