Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.58■□□□□ 0.4
HPS3Q969F9 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
HPS3Q969F9 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.57■□□□□ 0.4
HPS3Q969F9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HPS3Q969F9 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HPS3Q969F9 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 KRT18P28-201ENST00000453838 1332 ntBASIC17.57■□□□□ 0.4
HPS3Q969F9 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HPS3Q969F9 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.57■□□□□ 0.4
HPS3Q969F9 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.57■□□□□ 0.4
HPS3Q969F9 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.57■□□□□ 0.4
HPS3Q969F9 METTL21AP1-201ENST00000438852 635 ntBASIC17.57■□□□□ 0.4
HPS3Q969F9 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.57■□□□□ 0.4
HPS3Q969F9 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.57■□□□□ 0.4
HPS3Q969F9 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
HPS3Q969F9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.57■□□□□ 0.4
HPS3Q969F9 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.57■□□□□ 0.4
HPS3Q969F9 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.57■□□□□ 0.4
HPS3Q969F9 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
HPS3Q969F9 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
HPS3Q969F9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.57■□□□□ 0.4
HPS3Q969F9 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.57■□□□□ 0.4
HPS3Q969F9 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HPS3Q969F9 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HPS3Q969F9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
HPS3Q969F9 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HPS3Q969F9 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
HPS3Q969F9 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.56■□□□□ 0.4
HPS3Q969F9 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.56■□□□□ 0.4
HPS3Q969F9 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 AL138828.2-201ENST00000615812 383 ntBASIC17.56■□□□□ 0.4
HPS3Q969F9 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HPS3Q969F9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.56■□□□□ 0.4
HPS3Q969F9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HPS3Q969F9 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.56■□□□□ 0.4
HPS3Q969F9 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HPS3Q969F9 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
HPS3Q969F9 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.55■□□□□ 0.4
HPS3Q969F9 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HPS3Q969F9 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 AC087481.3-201ENST00000602886 1894 ntBASIC17.55■□□□□ 0.4
HPS3Q969F9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HPS3Q969F9 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HPS3Q969F9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HPS3Q969F9 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HPS3Q969F9 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.55■□□□□ 0.4
HPS3Q969F9 AC125807.1-201ENST00000483097 614 ntBASIC17.55■□□□□ 0.4
HPS3Q969F9 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms