Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 HTR7P1-202ENST00000624664 4411 ntBASIC24.43■■□□□ 1.5
VPS8Q8N3P4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 HILS1-202ENST00000545329 423 ntBASIC24.43■■□□□ 1.5
VPS8Q8N3P4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 AC233724.13-201ENST00000598383 410 ntBASIC24.43■■□□□ 1.5
VPS8Q8N3P4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
VPS8Q8N3P4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 ACA64.2-201ENST00000459014 129 ntBASIC24.42■■□□□ 1.5
VPS8Q8N3P4 AC119751.2-201ENST00000504529 210 ntBASIC24.42■■□□□ 1.5
VPS8Q8N3P4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS8Q8N3P4 TNRC18P3-201ENST00000441896 2691 ntBASIC24.42■■□□□ 1.5
VPS8Q8N3P4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 AC018665.1-201ENST00000622927 1362 ntBASIC24.41■■□□□ 1.5
VPS8Q8N3P4 OR8S1-201ENST00000310194 1080 ntBASIC24.41■■□□□ 1.5
VPS8Q8N3P4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 AC112492.5-201ENST00000421897 457 ntBASIC24.41■■□□□ 1.5
VPS8Q8N3P4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 SNX29P1-201ENST00000548357 1007 ntBASIC24.41■■□□□ 1.5
VPS8Q8N3P4 AP001063.1-201ENST00000568332 529 ntBASIC24.41■■□□□ 1.5
VPS8Q8N3P4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC24.41■■□□□ 1.5
VPS8Q8N3P4 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 AL138799.1-201ENST00000448213 1675 ntBASIC24.4■■□□□ 1.5
VPS8Q8N3P4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
VPS8Q8N3P4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
VPS8Q8N3P4 ANKRD19P-201ENST00000338192 862 ntBASIC24.39■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms