Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC134312.5-201ENST00000568031 1313 ntBASIC12.93□□□□□ -0.34
LMO4P61968 AC093525.8-201ENST00000624099 1342 ntBASIC12.93□□□□□ -0.34
LMO4P61968 LTB4R2-202ENST00000528054 3092 ntBASIC12.93□□□□□ -0.34
LMO4P61968 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 BRF1-202ENST00000379932 884 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
LMO4P61968 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC12.93□□□□□ -0.34
LMO4P61968 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC12.93□□□□□ -0.34
LMO4P61968 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC12.93□□□□□ -0.34
LMO4P61968 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.93□□□□□ -0.34
LMO4P61968 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
LMO4P61968 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 AC107373.2-201ENST00000607735 490 ntBASIC12.93□□□□□ -0.34
LMO4P61968 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 AC020916.1-201ENST00000587762 1774 ntBASIC12.93□□□□□ -0.34
LMO4P61968 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 MSTO2P-201ENST00000314835 1709 ntBASIC12.93□□□□□ -0.34
LMO4P61968 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 LINC02447-202ENST00000501888 2146 ntBASIC12.92□□□□□ -0.34
LMO4P61968 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
LMO4P61968 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 AC006449.5-201ENST00000610658 2098 ntBASIC12.92□□□□□ -0.34
LMO4P61968 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.92□□□□□ -0.34
LMO4P61968 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.92□□□□□ -0.34
LMO4P61968 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
LMO4P61968 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 STX1A-203ENST00000395155 783 ntTSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 PCDH8P1-201ENST00000428983 2773 ntBASIC12.92□□□□□ -0.34
LMO4P61968 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.92□□□□□ -0.34
LMO4P61968 GAPDHP40-201ENST00000505218 1006 ntBASIC12.92□□□□□ -0.34
LMO4P61968 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC12.92□□□□□ -0.34
LMO4P61968 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
LMO4P61968 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 CES3-203ENST00000543856 3178 ntTSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.92□□□□□ -0.34
LMO4P61968 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.92□□□□□ -0.34
LMO4P61968 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LMO4P61968 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms