Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDGFRAP16234 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.67■□□□□ 0.26
PDGFRAP16234 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.67■□□□□ 0.26
PDGFRAP16234 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDGFRAP16234 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDGFRAP16234 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.67■□□□□ 0.26
PDGFRAP16234 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDGFRAP16234 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PDGFRAP16234 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDGFRAP16234 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PDGFRAP16234 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.67■□□□□ 0.26
PDGFRAP16234 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PDGFRAP16234 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
PDGFRAP16234 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 AC092127.1-201ENST00000567093 3455 ntBASIC16.66■□□□□ 0.26
PDGFRAP16234 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.66■□□□□ 0.26
PDGFRAP16234 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.66■□□□□ 0.26
PDGFRAP16234 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.66■□□□□ 0.26
PDGFRAP16234 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 AL390754.1-201ENST00000619088 582 ntBASIC16.66■□□□□ 0.26
PDGFRAP16234 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.66■□□□□ 0.26
PDGFRAP16234 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PDGFRAP16234 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDGFRAP16234 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.66■□□□□ 0.26
PDGFRAP16234 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.65■□□□□ 0.26
PDGFRAP16234 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
PDGFRAP16234 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PDGFRAP16234 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.65■□□□□ 0.26
PDGFRAP16234 HIST3H2BA-201ENST00000436555 524 ntBASIC16.65■□□□□ 0.26
PDGFRAP16234 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
PDGFRAP16234 AC097493.3-201ENST00000509725 367 ntBASIC16.65■□□□□ 0.26
PDGFRAP16234 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.65■□□□□ 0.26
PDGFRAP16234 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.65■□□□□ 0.26
PDGFRAP16234 AC011467.4-201ENST00000594891 528 ntBASIC16.65■□□□□ 0.26
PDGFRAP16234 AL158211.3-201ENST00000607385 239 ntBASIC16.65■□□□□ 0.26
PDGFRAP16234 SPDYE12P-201ENST00000618416 771 ntBASIC16.65■□□□□ 0.26
PDGFRAP16234 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PDGFRAP16234 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PDGFRAP16234 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.65■□□□□ 0.26
PDGFRAP16234 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.65■□□□□ 0.26
PDGFRAP16234 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
PDGFRAP16234 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDGFRAP16234 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PDGFRAP16234 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.64■□□□□ 0.26
PDGFRAP16234 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.64■□□□□ 0.25
PDGFRAP16234 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PDGFRAP16234 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
PDGFRAP16234 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.64■□□□□ 0.25
PDGFRAP16234 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDGFRAP16234 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms