Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.38□□□□□ -0.43
CXCL1P09341 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CXCL1P09341 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.38□□□□□ -0.43
CXCL1P09341 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.38□□□□□ -0.43
CXCL1P09341 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC12.37□□□□□ -0.43
CXCL1P09341 AC105206.1-202ENST00000314927 2368 ntBASIC12.37□□□□□ -0.43
CXCL1P09341 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 AC073508.3-201ENST00000619697 1419 ntBASIC12.37□□□□□ -0.43
CXCL1P09341 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.37□□□□□ -0.43
CXCL1P09341 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.37□□□□□ -0.43
CXCL1P09341 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 AL359881.3-201ENST00000602640 1721 ntBASIC12.37□□□□□ -0.43
CXCL1P09341 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.37□□□□□ -0.43
CXCL1P09341 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CXCL1P09341 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC12.37□□□□□ -0.43
CXCL1P09341 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 AC010654.1-201ENST00000615722 808 ntBASIC12.37□□□□□ -0.43
CXCL1P09341 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 AC097359.2-201ENST00000604992 2389 ntBASIC12.37□□□□□ -0.43
CXCL1P09341 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 AC087386.2-201ENST00000623212 4637 ntBASIC12.37□□□□□ -0.43
CXCL1P09341 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.37□□□□□ -0.43
CXCL1P09341 SIGLEC16-201ENST00000599858 1437 ntBASIC12.37□□□□□ -0.43
CXCL1P09341 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CXCL1P09341 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CXCL1P09341 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
CXCL1P09341 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.36□□□□□ -0.43
CXCL1P09341 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.36□□□□□ -0.43
CXCL1P09341 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.36□□□□□ -0.43
CXCL1P09341 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC12.36□□□□□ -0.43
CXCL1P09341 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
CXCL1P09341 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.36□□□□□ -0.43
CXCL1P09341 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 NABP1-203ENST00000409510 843 ntTSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CXCL1P09341 KRT8P26-201ENST00000534154 1276 ntBASIC12.36□□□□□ -0.43
CXCL1P09341 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.36□□□□□ -0.43
CXCL1P09341 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms