Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 AC018665.1-201ENST00000622927 1362 ntBASIC18.61■□□□□ 0.57
HLA-DOAP06340 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 SLC25A47P1-201ENST00000531577 414 ntBASIC18.61■□□□□ 0.57
HLA-DOAP06340 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DOAP06340 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DOAP06340 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 PTP4A1P2-201ENST00000546033 454 ntBASIC18.6■□□□□ 0.57
HLA-DOAP06340 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.6■□□□□ 0.57
HLA-DOAP06340 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DOAP06340 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DOAP06340 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 AL133267.1-201ENST00000398220 340 ntBASIC18.59■□□□□ 0.57
HLA-DOAP06340 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 CROCCP4-201ENST00000457096 498 ntBASIC18.59■□□□□ 0.57
HLA-DOAP06340 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms