Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.32■□□□□ 0.04
VMP1Q96GC9 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 AC073439.1-201ENST00000624121 1774 ntBASIC15.32■□□□□ 0.04
VMP1Q96GC9 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 SLC25A39P2-201ENST00000537614 270 ntBASIC15.32■□□□□ 0.04
VMP1Q96GC9 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 AL603832.2-201ENST00000566195 2125 ntBASIC15.32■□□□□ 0.04
VMP1Q96GC9 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.32■□□□□ 0.04
VMP1Q96GC9 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 AL161772.1-201ENST00000610494 4412 ntBASIC15.31■□□□□ 0.04
VMP1Q96GC9 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 ME2P1-201ENST00000426028 1970 ntBASIC15.31■□□□□ 0.04
VMP1Q96GC9 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 AL139400.1-201ENST00000366220 510 ntBASIC15.31■□□□□ 0.04
VMP1Q96GC9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 FAM58DP-201ENST00000428076 619 ntBASIC15.31■□□□□ 0.04
VMP1Q96GC9 RBPMS2P1-201ENST00000437762 623 ntBASIC15.31■□□□□ 0.04
VMP1Q96GC9 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 AC025678.2-201ENST00000562061 970 ntBASIC15.31■□□□□ 0.04
VMP1Q96GC9 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VMP1Q96GC9 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VMP1Q96GC9 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms