Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 Z97205.2-201ENST00000564697 1639 ntBASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 TOMM22P5-201ENST00000416399 439 ntBASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AC044860.1-202ENST00000559481 777 ntBASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM3Q8TF72 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.14■□□□□ 0.18
SHROOM3Q8TF72 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SHROOM3Q8TF72 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 AC025048.3-201ENST00000590609 569 ntBASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 AC005702.4-201ENST00000618393 416 ntBASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms