Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC132192.2-201ENST00000596206 1147 ntBASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 ECM1P1-201ENST00000604092 1279 ntBASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC107373.2-201ENST00000607735 490 ntBASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC103691.2-201ENST00000618824 433 ntBASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.67■□□□□ 0.58
SMC1BQ8NDV3 PRORSD1P-202ENST00000563365 2154 ntBASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 CTBP2P4-201ENST00000513884 920 ntBASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 RNF41-210ENST00000552244 716 ntTSL 3 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 AC243562.2-201ENST00000561247 970 ntBASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 AL353770.1-201ENST00000614915 403 ntBASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMC1BQ8NDV3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms