Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.27■□□□□ 0.2
RTL3Q8N8U3 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.27■□□□□ 0.19
RTL3Q8N8U3 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 MRPS18AP1-201ENST00000414458 589 ntBASIC16.26■□□□□ 0.19
RTL3Q8N8U3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 AC114501.2-201ENST00000439631 535 ntBASIC16.26■□□□□ 0.19
RTL3Q8N8U3 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 INGX-202ENST00000489074 768 ntBASIC16.26■□□□□ 0.19
RTL3Q8N8U3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 AC008738.7-201ENST00000609744 511 ntBASIC16.26■□□□□ 0.19
RTL3Q8N8U3 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RTL3Q8N8U3 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RTL3Q8N8U3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms