Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC027796.2-201ENST00000575326 344 ntBASIC14.22□□□□□ -0.13
H3F3AP84243 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.22□□□□□ -0.13
H3F3AP84243 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.22□□□□□ -0.13
H3F3AP84243 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.22□□□□□ -0.13
H3F3AP84243 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.22□□□□□ -0.13
H3F3AP84243 AL844908.2-201ENST00000609461 460 ntBASIC14.22□□□□□ -0.13
H3F3AP84243 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.22□□□□□ -0.13
H3F3AP84243 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.22□□□□□ -0.13
H3F3AP84243 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.22□□□□□ -0.13
H3F3AP84243 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.22□□□□□ -0.13
H3F3AP84243 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
H3F3AP84243 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
H3F3AP84243 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
H3F3AP84243 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.21□□□□□ -0.13
H3F3AP84243 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
H3F3AP84243 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.21□□□□□ -0.13
H3F3AP84243 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
H3F3AP84243 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
H3F3AP84243 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
H3F3AP84243 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.21□□□□□ -0.13
H3F3AP84243 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.21□□□□□ -0.13
H3F3AP84243 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.21□□□□□ -0.13
H3F3AP84243 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.21□□□□□ -0.13
H3F3AP84243 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.21□□□□□ -0.13
H3F3AP84243 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.21□□□□□ -0.13
H3F3AP84243 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.21□□□□□ -0.13
H3F3AP84243 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
H3F3AP84243 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 Z97205.2-201ENST00000564697 1639 ntBASIC14.21□□□□□ -0.13
H3F3AP84243 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
H3F3AP84243 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H3F3AP84243 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.14
H3F3AP84243 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.21□□□□□ -0.14
H3F3AP84243 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.21□□□□□ -0.14
H3F3AP84243 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.21□□□□□ -0.14
H3F3AP84243 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
H3F3AP84243 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
H3F3AP84243 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
H3F3AP84243 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
H3F3AP84243 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms