Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.49■□□□□ 0.23
PTPN9P43378 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
PTPN9P43378 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN9P43378 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 TMBIM7P-203ENST00000641617 1718 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 AC241585.1-201ENST00000433527 519 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.48■□□□□ 0.23
PTPN9P43378 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 SDHAP3-202ENST00000515467 728 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.48■□□□□ 0.23
PTPN9P43378 RFPL4AP1-201ENST00000530883 850 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.48■□□□□ 0.23
PTPN9P43378 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 AC074044.1-201ENST00000609673 707 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 AC093512.1-201ENST00000617969 520 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 LINC00554-201ENST00000564841 3011 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN9P43378 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN9P43378 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN9P43378 AC022532.1-201ENST00000624563 1728 ntBASIC16.48■□□□□ 0.23
PTPN9P43378 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PTPN9P43378 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 SSR4P1-203ENST00000599569 2260 ntBASIC16.47■□□□□ 0.23
PTPN9P43378 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN9P43378 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.47■□□□□ 0.23
PTPN9P43378 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.47■□□□□ 0.23
PTPN9P43378 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.47■□□□□ 0.23
PTPN9P43378 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.47■□□□□ 0.23
PTPN9P43378 RPL13P2-201ENST00000440687 659 ntBASIC16.47■□□□□ 0.23
PTPN9P43378 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN9P43378 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.47■□□□□ 0.23
PTPN9P43378 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN9P43378 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms