Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FBXL2-205ENST00000432809 1618 ntTSL 212.22□□□□□ -0.456e-6■■■■■ 103.4
SF3B1O75533 STK11IP-208ENST00000468584 574 ntTSL 312.2□□□□□ -0.461e-8■■■■■ 103.4
SF3B1O75533 EXT2-201ENST00000343631 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.463e-6■■■■■ 103.4
SF3B1O75533 TRIQK-213ENST00000521617 774 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.466e-6■■■■■ 103.4
SF3B1O75533 NTAN1-203ENST00000565187 1043 ntTSL 212.17□□□□□ -0.466e-6■■■■■ 103.4
SF3B1O75533 MPDU1-222ENST00000581886 924 ntTSL 312.17□□□□□ -0.461e-8■■■■■ 103.4
SF3B1O75533 TRAK1-206ENST00000449246 3260 ntTSL 1 (best) BASIC12.17□□□□□ -0.466e-6■■■■■ 103.4
SF3B1O75533 GOT2-201ENST00000245206 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.466e-6■■■■■ 103.4
SF3B1O75533 TACC1-211ENST00000520973 2564 ntTSL 2 BASIC12.16□□□□□ -0.461e-8■■■■■ 103.4
SF3B1O75533 RECQL5-201ENST00000317905 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.461e-8■■■■■ 103.4
SF3B1O75533 TSC2-218ENST00000562474 589 ntTSL 512.14□□□□□ -0.471e-8■■■■■ 103.4
SF3B1O75533 POMGNT1-202ENST00000371992 2934 ntTSL 2 BASIC12.14□□□□□ -0.471e-8■■■■■ 103.4
SF3B1O75533 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.471e-8■■■■■ 103.4
SF3B1O75533 DLG5-204ENST00000463362 2927 ntTSL 1 (best)12.13□□□□□ -0.476e-6■■■■■ 103.4
SF3B1O75533 FCHSD1-210ENST00000523856 3932 ntTSL 212.13□□□□□ -0.471e-8■■■■■ 103.4
SF3B1O75533 PHF8-201ENST00000322659 2921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.472e-12■■■■■ 103.4
SF3B1O75533 TACC1-224ENST00000522955 2268 ntTSL 212.11□□□□□ -0.471e-8■■■■■ 103.4
SF3B1O75533 CDC37L1-201ENST00000381854 3502 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.476e-6■■■■■ 103.4
SF3B1O75533 MED29-201ENST00000315588 3653 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.472e-12■■■■■ 103.4
SF3B1O75533 SHCBP1-207ENST00000569702 465 ntTSL 312.08□□□□□ -0.486e-6■■■■■ 103.4
SF3B1O75533 PNP-204ENST00000554056 1635 ntTSL 512.07□□□□□ -0.481e-8■■■■■ 103.4
SF3B1O75533 COA1-208ENST00000431651 720 ntAPPRIS ALT2 TSL 312.05□□□□□ -0.481e-8■■■■■ 103.4
SF3B1O75533 MPDU1-206ENST00000571391 677 ntTSL 212.05□□□□□ -0.481e-8■■■■■ 103.4
SF3B1O75533 G2E3-AS1-203ENST00000550680 471 ntTSL 312.04□□□□□ -0.486e-6■■■■■ 103.4
SF3B1O75533 SHPRH-201ENST00000275233 6649 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.486e-6■■■■■ 103.4
SF3B1O75533 SERINC5-202ENST00000507668 6479 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.491e-8■■■■■ 103.4
SF3B1O75533 ATE1-204ENST00000423243 2031 ntTSL 1 (best)11.99□□□□□ -0.496e-6■■■■■ 103.4
SF3B1O75533 DHODH-206ENST00000573843 549 ntTSL 411.98□□□□□ -0.492e-12■■■■■ 103.4
SF3B1O75533 NAA60-230ENST00000575733 700 ntTSL 411.97□□□□□ -0.496e-6■■■■■ 103.4
SF3B1O75533 NUP98-212ENST00000488828 712 ntTSL 211.97□□□□□ -0.491e-8■■■■■ 103.4
SF3B1O75533 WDR82-201ENST00000296490 4293 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.56e-6■■■■■ 103.4
SF3B1O75533 KIF13B-203ENST00000522846 1965 ntTSL 211.94□□□□□ -0.56e-6■■■■■ 103.4
SF3B1O75533 AFMID-207ENST00000588199 778 ntTSL 511.92□□□□□ -0.56e-6■■■■■ 103.4
SF3B1O75533 SHPRH-211ENST00000629427 7338 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.56e-6■■■■■ 103.4
SF3B1O75533 SMARCAL1-203ENST00000392128 2431 ntAPPRIS ALT2 TSL 1 (best)11.9□□□□□ -0.51e-8■■■■■ 103.4
SF3B1O75533 NAA60-233ENST00000576787 570 ntTSL 411.89□□□□□ -0.516e-6■■■■■ 103.4
SF3B1O75533 BICD1-201ENST00000281474 3281 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.511e-8■■■■■ 103.4
SF3B1O75533 FTX-202ENST00000423992 696 ntTSL 511.81□□□□□ -0.521e-8■■■■■ 103.4
SF3B1O75533 GAB1-207ENST00000509992 743 ntTSL 311.81□□□□□ -0.525e-6■■■■■ 103.4
SF3B1O75533 BRF2-203ENST00000521170 550 ntTSL 4 BASIC11.79□□□□□ -0.526e-6■■■■■ 103.4
SF3B1O75533 U2AF1-209ENST00000475639 4694 ntTSL 1 (best)11.78□□□□□ -0.526e-6■■■■■ 103.4
SF3B1O75533 THRB-206ENST00000416420 2571 ntAPPRIS P2 TSL 2 BASIC11.77□□□□□ -0.539e-9■■■■■ 103.4
SF3B1O75533 TRAPPC3-205ENST00000462715 2428 ntTSL 211.75□□□□□ -0.536e-6■■■■■ 103.4
SF3B1O75533 SP100-214ENST00000466710 574 ntTSL 411.72□□□□□ -0.536e-6■■■■■ 103.4
SF3B1O75533 WNK4-201ENST00000246914 4001 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.546e-6■■■■■ 103.4
SF3B1O75533 MPDU1-207ENST00000571822 1020 ntTSL 211.7□□□□□ -0.541e-8■■■■■ 103.4
SF3B1O75533 EFCAB2-208ENST00000473686 906 ntTSL 511.7□□□□□ -0.546e-6■■■■■ 103.4
SF3B1O75533 SEC14L1-227ENST00000591437 2828 ntTSL 5 BASIC11.7□□□□□ -0.544e-6■■■■■ 103.4
SF3B1O75533 CCND1-201ENST00000227507 4307 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.546e-6■■■■■ 103.4
SF3B1O75533 ZNF268-207ENST00000537973 559 ntTSL 311.66□□□□□ -0.546e-6■■■■■ 103.4
SF3B1O75533 EGLN2-214ENST00000597746 459 ntTSL 511.65□□□□□ -0.545e-6■■■■■ 103.4
SF3B1O75533 XPO6-212ENST00000567842 588 ntTSL 511.65□□□□□ -0.541e-8■■■■■ 103.4
SF3B1O75533 COG2-202ENST00000366669 2921 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.556e-6■■■■■ 103.4
SF3B1O75533 SLC25A25-202ENST00000373066 3714 ntTSL 1 (best) BASIC11.62□□□□□ -0.556e-6■■■■■ 103.4
SF3B1O75533 ZNF268-202ENST00000416488 897 ntTSL 4 BASIC11.6□□□□□ -0.556e-6■■■■■ 103.4
SF3B1O75533 FAM126B-201ENST00000286181 4778 ntTSL 1 (best)11.58□□□□□ -0.566e-6■■■■■ 103.4
SF3B1O75533 USP53-201ENST00000274030 5936 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.561e-8■■■■■ 103.4
SF3B1O75533 HS1BP3-202ENST00000402541 4358 ntTSL 1 (best) BASIC11.57□□□□□ -0.566e-6■■■■■ 103.4
SF3B1O75533 COA1-214ENST00000457939 406 ntTSL 311.57□□□□□ -0.561e-8■■■■■ 103.4
SF3B1O75533 PDCD6-210ENST00000513582 3500 ntTSL 211.54□□□□□ -0.562e-6■■■■■ 103.4
SF3B1O75533 ATP6V1D-205ENST00000554087 1750 ntTSL 511.51□□□□□ -0.576e-6■■■■■ 103.4
SF3B1O75533 ACOT9-202ENST00000379295 2768 ntTSL 2 BASIC11.5□□□□□ -0.576e-6■■■■■ 103.4
SF3B1O75533 THRB-208ENST00000428492 539 ntTSL 411.49□□□□□ -0.579e-9■■■■■ 103.4
SF3B1O75533 COA1-213ENST00000451651 585 ntTSL 311.47□□□□□ -0.571e-8■■■■■ 103.4
SF3B1O75533 USP22-208ENST00000578446 605 ntTSL 311.47□□□□□ -0.576e-6■■■■■ 103.4
SF3B1O75533 HDAC8-215ENST00000444609 607 ntTSL 311.44□□□□□ -0.581e-8■■■■■ 103.4
SF3B1O75533 INTS3-202ENST00000368669 2889 ntTSL 211.44□□□□□ -0.582e-6■■■■■ 103.4
SF3B1O75533 ASAP3-205ENST00000475814 805 ntTSL 511.4□□□□□ -0.586e-6■■■■■ 103.4
SF3B1O75533 THOC5-210ENST00000443089 786 ntTSL 211.4□□□□□ -0.586e-6■■■■■ 103.4
SF3B1O75533 DLG5-209ENST00000484525 315 ntTSL 211.38□□□□□ -0.596e-6■■■■■ 103.4
SF3B1O75533 HNRNPLL-207ENST00000425682 570 ntTSL 311.37□□□□□ -0.592e-12■■■■■ 103.4
SF3B1O75533 AP2A2-217ENST00000529818 549 ntTSL 411.37□□□□□ -0.591e-8■■■■■ 103.4
SF3B1O75533 S100PBP-210ENST00000526230 573 ntTSL 411.35□□□□□ -0.596e-6■■■■■ 103.4
SF3B1O75533 NAA60-221ENST00000573593 565 ntTSL 411.34□□□□□ -0.596e-6■■■■■ 103.4
SF3B1O75533 PLEKHH1-216ENST00000561456 595 ntTSL 411.34□□□□□ -0.591e-8■■■■■ 103.4
SF3B1O75533 COA1-217ENST00000478504 552 ntTSL 411.34□□□□□ -0.591e-8■■■■■ 103.4
SF3B1O75533 POLR2E-202ENST00000585838 487 ntTSL 511.3□□□□□ -0.63e-6■■■■■ 103.4
SF3B1O75533 POMGNT1-203ENST00000396420 3480 ntTSL 2 BASIC11.29□□□□□ -0.61e-8■■■■■ 103.4
SF3B1O75533 DLG5-203ENST00000459739 3167 ntTSL 1 (best)11.26□□□□□ -0.616e-6■■■■■ 103.4
SF3B1O75533 NAA60-220ENST00000573580 758 ntTSL 4 BASIC11.26□□□□□ -0.616e-6■■■■■ 103.4
SF3B1O75533 ZCRB1-204ENST00000552235 633 ntTSL 511.22□□□□□ -0.616e-6■■■■■ 103.4
SF3B1O75533 DHODH-204ENST00000572003 542 ntTSL 411.22□□□□□ -0.612e-12■■■■■ 103.4
SF3B1O75533 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC11.19□□□□□ -0.621e-8■■■■■ 103.4
SF3B1O75533 TACC1-229ENST00000524354 476 ntTSL 511.18□□□□□ -0.621e-8■■■■■ 103.4
SF3B1O75533 PTPMT1-204ENST00000527079 2272 ntTSL 1 (best)11.15□□□□□ -0.621e-8■■■■■ 103.4
SF3B1O75533 MED29-203ENST00000596297 636 ntTSL 511.14□□□□□ -0.632e-12■■■■■ 103.4
SF3B1O75533 THOC5-204ENST00000397873 2374 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.636e-6■■■■■ 103.4
SF3B1O75533 PRPF8-203ENST00000571958 380 ntTSL 311.12□□□□□ -0.631e-8■■■■■ 103.4
SF3B1O75533 ACOT9-207ENST00000492081 683 ntTSL 3 BASIC11.11□□□□□ -0.636e-6■■■■■ 103.4
SF3B1O75533 ETFDH-202ENST00000436096 590 ntTSL 311.11□□□□□ -0.636e-6■■■■■ 103.4
SF3B1O75533 UTP6-209ENST00000583408 1440 ntTSL 211.11□□□□□ -0.631e-8■■■■■ 103.4
SF3B1O75533 RAB3GAP2-202ENST00000358951 7257 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.643e-6■■■■■ 103.4
SF3B1O75533 FBXL2-221ENST00000507198 1259 ntTSL 2 BASIC11.07□□□□□ -0.646e-6■■■■■ 103.4
SF3B1O75533 ZNF592-202ENST00000559607 3910 ntTSL 1 (best)11.05□□□□□ -0.642e-6■■■■■ 103.4
SF3B1O75533 AKT2-223ENST00000491778 573 ntTSL 411.04□□□□□ -0.646e-6■■■■■ 103.4
SF3B1O75533 NAA60-218ENST00000573201 657 ntTSL 311.03□□□□□ -0.646e-6■■■■■ 103.4
SF3B1O75533 AFMID-202ENST00000409257 1730 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.646e-6■■■■■ 103.4
SF3B1O75533 NAA60-206ENST00000570372 398 ntTSL 511.02□□□□□ -0.656e-6■■■■■ 103.4
SF3B1O75533 NAA60-227ENST00000574950 584 ntTSL 411.02□□□□□ -0.656e-6■■■■■ 103.4
SF3B1O75533 THRB-211ENST00000447875 754 ntTSL 1 (best)11□□□□□ -0.659e-9■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 2179.4 ms